Table 2.

Photosynthesis-related proteins identified by proteomic studies that have accumulation affected by virus infection

Plant species	Virus	Interaction	Protein species	References
Nicotiana benthamiana	Pepper Mild Mottle Virus	Compatible	Cyt. F; FNR (chain b); Cyt. F; ATPδ; ATPε; Lhca type III; RbcS; RbcL; GS; SBPase; PRK; Rca; PGK; PGK; SFBA; PsaD; Ribosomal protein L 14	Pineda et al. (2010)
Nicotiana benthamiana	Pepper Mild Mottle Virus	Compatible	PsbP species A, B, C, and D	Pérez-Bueno et al. (2004)
Zea mays	Sugarcane Mosaic Virus	Incompatible	FNR; PS I subunit IV; PS I subunit I; OEE3; RuBisCO large subunit; RuBisCO small subunit; RuBisCo subunit binding-protein beta subunit	Wu et al. (2013)
Zea mays	Sugarcane Mosaic Virus	Compatible	FNR; PS I ycf4; Cab binding protein 6A; Cab binding protein 8; RuBisCO large subunit; RuBisCo subunit binding-protein beta subunit	Wu et al. (2013)
Vigna mungo	Mungbean Yellow Mosaic India Virus	Compatible	OEE1; RuBisCO activase; HSP70b; Chaperonin 60 alpha; PSI subunit II; RuBisCO large subunit; GS; PSI-D; PSI subunit IV B; PRK; RuBisCO small subunit; Triose-phosphate isomerise; Glycine hydroxymethyltransferase 2; Cab binding protein 4 b; OEE2; OEE3–2; GAPDH A; Plastoquinol-plastocyanin reductase; Rieske iron-sulfur protein precursor; SBPase; Glycine cleavage system protein H; Thioredoxin M; Chlorophyll magnesium chelatase; FNR; ATPε; Cytochrome c oxidase subunit 6b-1a; EF-Tu	Kundu et al. (2013)
Solanum lycopersicum	Cucumber Mosaic Virus	Incompatible/compatible	OEE2; OEE1; RuBisCO large subunit; RuBisCO activase; T-protein; Glycolate oxidase; AOAT2	Di Carli et al. (2010)
Arabidopsis thaliana	Oilseed rape mosaic virus	Compatible	LHCB1.4	Niehl et al. (2013)
Oryza sativa	Rice stripe virus	Compatible	Magnesium-chelatase; Uroporphyrinogen decarboxylase 1; Porphobilinogen deaminase; Magnesium-chelatase subunit D; Glutamate-1-semialdehyde 2,1-aminomutase; Uroporphyrinogen decarboxylase 2; Protoporphyrinogen oxidase; Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclise; Delta-aminolevulinic acid dehydratase Glutamyl-tRNA reductase; RuBisCO large subunit; OEE3; OEE2; PSI subunit XI; Cab binding protein; PSI subunit II; PsbQ domain protein family; LHCII type III; OEE3–2; PSI subunit N; Ribulose-phosphate 3-epimerase; FBPase; PsbP; FNR; FTR; SNT7	Wang et al. (2015)
Nicotiana benthamiana	Tobacco Mosaic Virus	Compatible	LHCa3; PsbL; PsbO; PetE; ATPβ; ATPδ; ATPβ’	Wang et al. (2016)
Nicotiana benthamiana	Tobacco Mosaic Virus	Incompatible	LHCa3; LHCb1; LHCb4; LHCb5; LHCb6; PsbA; PsbL; PsbO; PsbQ; PsbS; PetB; PetD; PsaF; PsaG; PsaJ; PsaK; PetE; PetF; ATPβ; ATPγ; ATPδ; ATPβ’	Wang et al. (2016)
Solanumlycopersicum	Tomato yellow leaf curl virus	Compatible/incompatible	Cab binding protein 4; Cab binding protein 8; OEE1; RuBisCO accumulation factor 1; RuBisCO activase 1; RuBisCO; RuBisCO large subunit; RuBisCO subunit beta; RuBisCO large chain OS; FNR; Protein TIC 62; EF-G; EF-TuB; GLDC	Huang et al. (2016)
Nicotiana benthamiana	Tomato yellow leaf curl China virus	Incompatible	PsbH; CP24; RuBisCO large subunit; NDH subunit K; Curvature thylakoid 1A; RuBisCO small subunit; PsbB; CP26	Zhong et al. (2017)
Vigna unguiculata	Cowpea Severe Mosaic Virus	Compatible	CP26; thylakoid lumenal 17.9 kDa; Protein Ycf2	Paiva et al. (2016)
Pisum sativum	Pea Seed-borne Mosaic Virus	Compatible/incompatible	ATPγ; OEE1; PsaK; Chaperone protein ClpC; Mg-protoporphyrin IX chelatase; PSI subunit III; Thylakoid lumenal 17.4 kDa protein; Cab binding protein complex I; Cab binding protein AB80; Cab binding protein 3; GAPDH	Cerna et al. (2017)
Oryza sativa	Rice Black-Streaked Dwarf Virus	Compatible	Cab binding protein; RuBisCO large subunit; FBA; RuBisCO small subunit; PGK; PRK; GAPDH A; ATPβ; FNR; GS; EF-Tu	Xu et al. (2013)
Vigna mungo	Mungbean Yellow Mosaic India Virus	Incompatible	Chaperonin 60 alpha; Glycine hydroxymethyltransferase; GAPDH A; OEE1; RuBisCO activase; PSI subunit D; PSI subunit IV B; Cab binding protein 4; OEE2; Rieske iron–sulfur protein precursor	Kundu et al. (2011)