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. 2019 May 7;33(8):9182–9193. doi: 10.1096/fj.201900321R

TABLE 1.

Interface residue binding energy contributions and hydrogen bonds observed between αKL1 and α2-3-sialyllactose during the simulationsa

Residue ΔGbinding (kcal/mol)b Hydrogen bond partner Residue ΔGbinding (kcal/mol)b Hydrogen bond partner
Ser115 −0.3 ± 0.3 Glu414 0.7 ± 0.4 Sialic acid
Leu117 −0.4 ± 0.5 Gly416 −0.1 ± 0.1
Trp194 −1.0 ± 0.4 Trp417 −0.5 ± 0.4
Asn239 −0.8 ± 0.2 Sialic acid Phe418 −1.2 ± 0.6
Tyr241 −0.6 ± 0.3 Trp458 −0.3 ± 0.3
Val242 −1.3 ± 0.5 Glu465 0.4 ± 0.3
His246 −1.4 ± 0.2 His467 −1.9 ± 1.1 Galactose
Leu253 −0.6 ± 0.4 Arg468 −2.9 ± 1.1 Glucose, sialic acid
Ser299 −0.1 ± 0.5 Sialic acid Arg474 −1.6 ± 0.7 Sialic Acid
Gly372 −0.5 ± 0.3 Total −18.1 ± 2.0
Pro373 −0.5 ± 0.2
Thr374 −0.2 ± 0.5 Glucose* −7.3 ± 1.4* Arg468*
Leu375 −0.7 ± 0.6 Galactose* −3.7 ± 0.6* His467*
Phe377 −1.4 ± 0.9 Sialic acid* −13.9 ± 1.6 Asn239*, Ser299*, Glu414*, Arg468*, Arg474*
Leu379 −0.6 ± 0.8 Total* −25.0 ± 2.8*
a

The binding energy contribution of the interface residues between αKL1 and α2-3-sialyllactose; hydrogen bonds are reported if present in at least 2 simulations for ≥50% of the analyzed trajectory. The interface residues are defined as those that had a mean heavy-heavy atom distance of <5 Å in at least 3 of the 4 simulations.

b

The binding free energy was decomposed in 2 ways. One is per amino acid residue, which gives rise to a total ΔGbinding = −18.1 ± 2.0 kcal/mol. The other (*) is per sugar unit, which gives rise to a total ΔGbinding = −25 ± 2.8 kcal/mol. Note that the 2 totals are not identical because the electrostatic salvation energies cannot be equally divided between the receptor and ligand and only the interface residues within 5 Å were included in the first calculation (some long-range electrostatic interactions were not included). Arg468 makes [3H] bonds with α2-3-sialyllactose (2 with sialic acid, 1 with glucose), and contributes to the largest single residue binding energy (−2.9 ± 1.1 kcal/mol). Mutation of this residue disrupts sKlotho regulation of TRPC6 (9).