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. 2019 Jun 5;294(30):11420–11432. doi: 10.1074/jbc.RA119.007367

Table 1.

Data collection and refinement statistics

Each dataset was collected from a single crystal.

STINGCBD–c-di-GMP complex STINGCBD–c-di-AMP complex (complete lid) STINGCBD–c-di-AMP complex (incomplete lid) STINGCBD–3′,3′-cGAMP complex STINGCBD–2′,3′-cGAMP complex
Protein Data Bank codes 6A04 6A03 6IYF 6A05 6A06
Data collection
    Wavelength (Å) 0.9798 0.9798 0.9798 0.9798 0.9798
    Space group P 21 21 21 P 21 21 21 P 21 21 21 P 21 21 21 P 21 21 21
    Cell dimensions
        a, b, c (Å) 49.691, 63.949, 101.591 50.517, 80.459, 101.564 49.785, 65.896, 100.571 49.405, 64.741, 100.953 49.628, 63.311, 101.036
        α, β, γ 90.00, 90.00, 90.00 90.00, 90.00, 90.00 90.00, 90.00, 90.00 90.00, 90.00, 90.00 90.00, 90.00, 90.00
    Resolution (Å) 50.00–1.90 (1.97–1.90)a 50.00–2.60 (2.69–2.60) 50.00–1.76 (1.79–1.76) 50.00–2.20 (2.28–2.20) 50.00–1.80 (1.86–1.80)
    Rmerge(%) 7.8 (41.3) 13.7 (54.3) 8.0 (71.1) 8.7 (50.7) 5.5 (44.9)
    〈I/σ(I)〉 42.20 (6.28) 19.85 (3.87) 21.37 (1.28) 30.52 (4.59) 47.45 (5.42)
    Completeness (%) 97.9 (100.0) 100.0 (100.0) 99.1 (84.1) 100.0 (100.0) 99.2 (99.0)
    Redundancy 6.6 (6.9) 7.1 (7.3) 7.1 (6.1) 6.9 (6.9) 7.0 (7.0)
Refinement
    No. of reflections 25,597 13,319 33,277 16,950 30,287
    Rwork/Rfree (%) 20.21/24.96 20.00/25.72 19.36/24.21 22.15/27.35 17.53/21.99
    No. of atoms
        Protein 2910 2841 2795 2921 2929
        Ligand 46 44 44 45 45
        Water 151 76 136 37 214
    B-factors (Å2)
        Protein 39.24 34.74 31.60 47.39 31.20
        Ligand 33.53 28.79 30.05 41.84 22.92
        Water 38.47 32.04 34.75 35.63 34.59
    Root mean square deviation
        Bond lengths (Å) 0.007 0.003 0.011 0.008 0.006
        Bond angles (°) 0.888 0.700 1.255 1.252 0.857
    Ramachandran plot
        Favored (%) 96.97 94.99 97.46 94.6 96.69
        Allowed (%) 3.03 4.72 2.54 5.4 3.31
        Disallowed (%) 0 0.29 0 0 0

a Values in parentheses are for highest-resolution shell.