TABLE 1.
Analytical specificity of the GenoType NTM-DR assay
| Microbial species | Reference straina | GenoType NTM-DR assay |
|
|---|---|---|---|
| Band patterns | Interpretationc | ||
| Mycobacterium spp. | |||
| M. abscessus subsp. abscessus | ATCC 19977 | CC, UC, SP 4, 5, 6, 9, 10b | M. abscessus subsp. abscessus |
| M. alvei | ATCC 51304 | CC, UC | Other species |
| M. avium | KMRC 00136-41011 | CC, UC, SP 1 | M. avium |
| M. abscessus subsp. bolletii | CCUG 50184 | CC, UC, SP 4, 5, 6, 7, 9, 10 | M. abscessus subsp. bolletii |
| M. celatum | ATCC 51131 | CC, UC, SP 4 | Other species |
| M. chelonae | ATCC 35752 | CC, UC, SP 4, 5 | M. chelonae |
| M. conceptionense | CCUG 50187 | CC, UC, SP 8, 9 | Other species |
| M. cosmeticum | ATCC BAA-878 | CC, UC, SP 4 | Other species |
| M. flavescens | ATCC 14474 | CC, UC | Other species |
| M. fortuitum | KMRC 00136-60004 | CC, UC | Other species |
| M. gordonae | ATCC 14470 | CC, UC, SP 4 | Other species |
| M. interjectum | ATCC 51457 | CC, UC, SP 2, 4 | Other species |
| M. intracellulare | ATCC 13950 | CC, UC, SP 2 | M. intracellulare |
| M. kansasii | ATCC 12478 | CC, UC, SP 4 | Other species |
| M. marinum | KMRC 00136-21108 | CC, UC, SP 4 | Other species |
| M. marseillense | KMRC 00136-83001 | CC, UC, SP 2 | M. intracellulare |
| M. abscessus subsp. massiliense | CCUG 48898 | CC, UC, SP 4, 5, 8, 9 | M. abscessus subsp. massiliense |
| M. mucogenicum | ATCC 49650 | CC, UC, SP 4 | Other species |
| M. neoaurum | ATCC 25795 | CC, UC, SP 4 | Other species |
| M. nonchromogenicum | KMRC 00136-46002 | CC, UC, SP 4 | Other species |
| M. obuense | ATCC 27023 | CC, UC | Other species |
| M. paraintracellulare | KCTC 29084 | CC, UC, SP 2 | M. intracellulare |
| M. parascrofulaceum | ATCC BAA-614 | CC, UC, SP 2, 3, 4 | Other species |
| M. paraterrae | KCTC 19556 | CC, UC, SP 4 | Other species |
| M. peregrinum | KMRC 00136-75003 | CC, UC | Other species |
| M. phlei | ATCC 11758 | CC, UC | Other species |
| M. senuense | KCTC 19147 | CC, UC, SP 4 | Other species |
| M. smegmatis | ATCC 19420 | CC, UC | Other species |
| M. szulgai | ATCC 35799 | CC, UC, SP 4 | Other species |
| M. terrae | ATCC 15755 | CC, UC | Other species |
| M. tuberculosis | ATCC 27294 | CC, UC, SP 4 | Other species |
| M. vaccae | ATCC 15483 | CC, UC, SP 4 | Other species |
| M. yongonense | KCTC 19555 | CC, UC, SP 2 | M. intracellulare |
| Nonmycobacterial Corynebacterineae spp. | |||
| Gordonia polyisoprenivorans | ATCC BAA-14 | CC, UC | Other species |
| Gordonia terrae | ATCC 25594 | CC, UC | Other species |
| Nocardia brasiliensis | ATCC 19296 | CC, UC | Other species |
| Rhodococcus ruber | ATCC 27863 | CC, UC | Other species |
| Tsukamurella pulmonis | ATCC 700081 | CC, UC | Other species |
a
ATCC, American Type Culture Collection; CCUG, Culture Collection University of Göteborg; KCTC, Korean Collection for Type Cultures; KMRC, Korea Mycobacterium Resource Center.
b
Numbers refer to species-specific probes (SP). CC, conjugate control; UC, universal control.
c
Bold type indicates species misidentification.