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. 2019 May 17;294(26):10253–10265. doi: 10.1074/jbc.RA119.008986

Table 3.

Steady-state kinetics of single nucleotide extension past 2′-F dG:dC, 2′-F dG:dT and N7-CH3 2′-F dG:dC, and N7-CH3 2′-F dG:dT base pairs by hpol η

The oligonucleotides used were as follows,

5′-FAM-CGGGCTCGTAAGCGTCATC-3′ 3′-GCCCGAGCATTCGCAGTAXTACT-5′

5′-FAM-CGGGCTCGTAAGCGTCATT-3′ 3′-GCCCGAGCATTCGCAGTAXTACT-5′

where X represents 2′-F dG and N7-CH3 2′-F dG.

Template base Pairing dNTP kcat Km kcat/Km
min1 μm μm1 min1
2′-F dG Mispair dATP 1.1 ± 0.1 4.2 ± 1.2 0.26 ± 0.08
N7-CH3 2′-F dG dATP 0.49 ± 0.04 7.1 ± 2.4 0.07 ± 0.02
2′-F dG Correct dATP 1.1 ± 0.1 15 ± 3 0.07 ± 0.02
N7-CH3 2′-F dG dATP 2.1 ± 0.1 1.4 ± 0.3 1.5 ± 0.3
2′-F dG Correct dCTP 0.95 ± 0.06 5.5 ± 2.2 0.17 ± 0.07
N7-CH3 2′-F dG dCTP 0.75 ± 0.03 4.6 ± 1.1 0.16 ± 0.04
2′-F dG Correct dGTP 2.1 ± 0.06 6.9 ± 1.0 0.3 ± 0.1
N7-CH3 2′-F dG dGTP 0.97 ± 0.03 3.8 ± 0.7 0.26 ± 0.1
2′-F dG Correct dTTP 1.0 ± 0.1 3.4 ± 0.7 0.3 ± 0.10
N7-CH3 2′-F dG dTTP 1.6 ± 0.1 0.96 ± 0.47 1.7 ± 0.8