Skip to main content
. Author manuscript; available in PMC: 2019 Jul 29.
Published in final edited form as: Alzheimers Dement. 2019 Mar 29;15(6):788–798. doi: 10.1016/j.jalz.2019.01.011

Table 1.

Gene set enrichment using the MSigDB database.

Gene Set Name [# Genes (K)] Description  # Genes in
 Overlap (k)
k/K p-value graphic file with name nihms-1035023-t0006.jpg FDR
q-value graphic file with name nihms-1035023-t0006.jpg
KEGG_CALCIUM_SIGNALING_PATHWAY [178] Calcium signaling pathway 18 graphic file with name nihms-1035023-t0007.jpg 4.42 e−10 8.21 e−8
KEGG_CHEMOKINE_SIGNALING_PATHWAY [190] Chemokine signaling pathway 16 graphic file with name nihms-1035023-t0007.jpg   5.56 e−8 5.17 e−6
KEGG_LONG_TERM_POTENTIATION [70] Long-term potentiation 8 graphic file with name nihms-1035023-t0007.jpg   1.29 e−5 8.02 e−4
KEGG_MAPK_SIGNALING_PATHWAY [267] MAPK signaling pathway 15 graphic file with name nihms-1035023-t0007.jpg   2.17 e−5 1.01 e−3
KEGG_HUNTINGTONS_DISEASE [185] Huntington’s disease 12 graphic file with name nihms-1035023-t0007.jpg   3.56 e−5 1.33 e−3
KEGG_ALZHEIMERS_DISEASE [169] Alzheimer’s disease 11 graphic file with name nihms-1035023-t0007.jpg   7.24 e−5 2.25 e−3
KEGG_NEUROACTIVE_LIGAND_RECEPTOR_INTER TERACTION [272] Neuroactive ligand-receptor interaction 14 graphic file with name nihms-1035023-t0007.jpg   1.03 e−4 2.74 e−3
KEGG_PHOSPHATIDYLINOSITOL_SIGNALING_SY_SYSTEM [76] Phosphatidylinositol signaling system 7 graphic file with name nihms-1035023-t0007.jpg   1.8 e−4 3.76 e−3
KEGG_GNRH_SIGNALING_PATHWAY [101] GnRH signaling pathway 8 graphic file with name nihms-1035023-t0007.jpg   1.82 e−4 3.76 e−3
KEGG_TIGHT_JUNCTION [134] Tight Junction 9 graphic file with name nihms-1035023-t0007.jpg   2.56 e−4 4.57 e−3

Abbreviations: MSigDB, Molecular Signatures Database; KEGG, Kyoto Encyclopedia of Genes and Genomes; MAPK, mitogen-activated protein kinases;GnRH, gonadotropin-releasing hormone; FDR, false discovery rate.