TABLE 1.
Clone | Cas9 form | RB1 genotypeb | Predicted proteinc | Off-target genotyped |
|
---|---|---|---|---|---|
ALDH1L1 | ZNF699 | ||||
U2OS | NA | Wild type | WT | NA | NA |
WT | |||||
21B2 | D10A | Wild type | WT | ND | ND |
WT | |||||
21B4 | D10A | Wild type | WT | WT | WT |
WT | |||||
11B5 | D10A | Wild type | WT | ND | ND |
WT | |||||
4C1 | D10A | Heterozygous | WT | WT | WT |
p.Y771fsX8 | |||||
21D5 | D10A | Heterozygous | WT | WT | WT |
p.Q770HdelX10 | |||||
21A1 | D10A | Heterozygous | WT | WT | WT |
p.I753delX12 | |||||
12C3 | D10A | Null | p.I752IfsX9 | WT | WT |
p.E748CdelX11 | |||||
5A5 | WT | Null | p.N757TX31 | WT | WT |
p.P776VdelX6 | |||||
6B1 | WT | Null | p.Y756YfsX14 | WT | WT |
p.S751SfsX10 | |||||
5C4 | WT | Null | p.S773FfsX14 | WT | WT |
p.Y756delX |
NA, not applicable; ND, not determined; WT, wild type.
Genotypes were determined by PCR and sequencing.
Amino acid coding changes were predicted based on nucleotide sequences.
The top-scoring off-target intragenic locations determined for each gRNA, ZNF699 for gRNA X22B and ALDH1L1 for gRNA X22C, were also sequenced to probe for unwanted mutations.