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. 2019 Jul 29;39(16):e00105-19. doi: 10.1128/MCB.00105-19

TABLE 1.

Characterization of the U2OS RB1 mutant clones generated by targeting exon 22a

Clone Cas9 form RB1 genotypeb Predicted proteinc Off-target genotyped
ALDH1L1 ZNF699
U2OS NA Wild type WT NA NA
WT
21B2 D10A Wild type WT ND ND
WT
21B4 D10A Wild type WT WT WT
WT
11B5 D10A Wild type WT ND ND
WT
4C1 D10A Heterozygous WT WT WT
p.Y771fsX8
21D5 D10A Heterozygous WT WT WT
p.Q770HdelX10
21A1 D10A Heterozygous WT WT WT
p.I753delX12
12C3 D10A Null p.I752IfsX9 WT WT
p.E748CdelX11
5A5 WT Null p.N757TX31 WT WT
p.P776VdelX6
6B1 WT Null p.Y756YfsX14 WT WT
p.S751SfsX10
5C4 WT Null p.S773FfsX14 WT WT
p.Y756delX
a

NA, not applicable; ND, not determined; WT, wild type.

b

Genotypes were determined by PCR and sequencing.

c

Amino acid coding changes were predicted based on nucleotide sequences.

d

The top-scoring off-target intragenic locations determined for each gRNA, ZNF699 for gRNA X22B and ALDH1L1 for gRNA X22C, were also sequenced to probe for unwanted mutations.