. Author manuscript; available in PMC: 2019 Jul 30.

Published in final edited form as: Curr Genet. 2018 Jun 27;65(1):201–212. doi: 10.1007/s00294-018-0862-4

Table 1.

Overall impact of Puf3p KO on transcription, translation and TE

	Upregulated in puf3Δ	Downregulated in puf3Δ
RNA-Seq
All genes list	620	489
Binding targets-Gerber list	31	2
Binding targets-Kershaw list	127	60
Binding targets-Freeberg list	86	33
Ribo-Seq
All genes list	446	50
Binding targets-Gerber list	8	2
Binding targets-Kershaw list	38	5
Binding targets-Freeberg list	23	5
TE
All genes list	1007	778
Binding targets-Gerber list	8	55
Binding targets-Kershaw list	133	183
Binding targets-Freeberg list	56	125

“All genes list” shows the number of regulated genes at the whole-genome scale. “Binding target” shows the number of regulated genes that were direct Puf3p target genes in previous reports