Table 6. Assembly statistics per SMRT cell# for PacBio data using HGAP3.0 and Quiver.
| Strainsa | Chromosome contig(s)b | Chromosome size (bp)c | Plasmids contig(s)d | Plasmid(s) size(s) (bp)e | Coverage (X)f |
|---|---|---|---|---|---|
| CFSAN027343 | |||||
| SMRT Cell # 1 | 3 | 5,351,371; 281,039; 81,920 | 1 | 88,847 | 134 |
| SMRT Cell # 2 | 2 | 5,525,151; 164,081 | 1 | 88,848 | 134 |
| SMRT Cell # 3 | 2 | 5,525,031; 164,076 | 1 | 88,847 | 129 |
| CFSAN027346 | |||||
| SMRT Cell # 1 | 1 | 5,592,579 | 2 | 1 (96,016), 2 (73,152) | 147 |
| SMRT Cell # 2 | 1 | 5,592,570 | 2 | 1 (96,016), 2 (73,152) | 156 |
| SMRT Cell # 3 | 1 | 5,592,582 | 2 | 1 (96,017), 2 (73,152) | 153 |
| CFSAN027350 | |||||
| SMRT Cell # 1 | 1 | 5,436,071 | 1 | 157,534 | 170 |
| SMRT Cell # 2 | 1 | 5,436,072 | 1 | 157,534 | 166 |
| SMRT Cell # 3 | 1 | 5,436,082 | 1 | 157,535 | 176 |
aThe statistic is listed for each SMRT cell# per isolate.
bThe # represents the assembled contigs that belong to the chromosome.
cThe size (bp) for each assembled contig that belongs to the chromosome.
dThe # represents the assembled contigs that belong to the plasmid(s).
eThe size (bp) for each assembled contig that belongs to the plasmid(s).
fThe number represents the mean coverage for the assembly for each SMRT cell per isolate.