Table 9. KEGG enzyme activity codes for which significantly different numbers of associated differentially expressed genes were present in comparisons of ‘mirror image’ expression categories.
Tissue | Expression category comparison1 | Number of DEGs in each expression category | Number of DEGs associated with KEGG enzyme activity codes in the contrasted expression categories | ||||
---|---|---|---|---|---|---|---|
KEGG enzyme activity code | DEGs | P2 | |||||
AR/TC-1_2 | 1 | 2 | 1 | 2 | |||
Shoot | AR-uuu_ddd | 105 | 166 | EC:3.1.3.16—phosphatase | 5 | 1 | 3.39E-02 |
AR-nun_ndn | 319 | 404 | EC:3.6.1.15—phosphatase | 3 | 26 | <1.00E-04 | |
EC:3.6.1.3—adenylpyrophosphatase | 1 | 15 | 1.50E-03 | ||||
AR-nnu_nnd | 1139 | 1276 | EC:1.11.1.7—lactoperoxidase | 4 | 21 | 1.89E-03 | |
EC:3.6.1.15—phosphatase | 17 | 50 | 2.70E-04 | ||||
EC:3.6.1.3—adenylpyrophosphatase | 12 | 35 | 2.87E-03 | ||||
TC-nud_ndu | 178 | 228 | EC:3.6.1.15—phosphatase | 2 | 12 | 2.73E-02 | |
EC:3.6.1.3—adenylpyrophosphatase | 0 | 10 | 3.08E-03 | ||||
TC-nun_ndn | 423 | 518 | EC:3.6.1.15—phosphatase | 4 | 18 | 1.51E-02 | |
TC-nnu_nnd | 866 | 872 | EC:1.11.1.7—lactoperoxidase | 3 | 14 | 9.34E-04 | |
Root | AR-nu_nd | 314 | 528 | EC:1.11.1.7—lactoperoxidase | 3 | 21 | 9.68E-03 |
EC:4.1.1.2—decarboxylase | 0 | 20 | 6.73E-04 | ||||
AR-nuu_ndd | 156 | 330 | EC:1.11.1.7—lactoperoxidase | 1 | 12 | 7.05E-02 | |
EC:4.1.1.2—decarboxylase | 0 | 18 | 1.25E-03 | ||||
AR-nnu_nnd | 1805 | 1761 | EC:1.11.1.7—lactoperoxidase | 9 | 44 | <1.00E-04 | |
EC:3.6.1.15—phosphatase | 39 | 86 | <1.00E-04 | ||||
EC:3.6.1.3—adenylpyrophosphatase | 33 | 63 | 1.28E-03 | ||||
TC-nnu_nnd | 1274 | 1625 | EC:3.1.3.16—phosphatase | 18 | 9 | 1.93E-02 | |
EC:1.11.1.7—lactoperoxidase | 6 | 45 | <1.00E-04 | ||||
EC:3.6.1.15—phosphatase | 28 | 87 | <1.00E-04 | ||||
EC:3.6.1.3—adenylpyrophosphatase | 21 | 65 | 1.60E-04 |
1Abbreviated expression categories. u = up; d = down; n = ns.
2P-values were calculated using Fisher’s Exact Test comparing the total number of DEGs in each of expression categories 1 and 2 with the corresponding values associated with the KEGG enzyme activity codes.