Table 1.
Number of SNP and overlapping genes included in SowPro90
| SNP category | Number of SNP | Number of genes |
|---|---|---|
| SNP in genes and regulatory regions (RNA and genome sequencing) | ||
| 42 QTL for age at puberty (UNL) | 11,474 | 788 |
| 222 QTL for age at puberty (USMARC) | 21,490 | 1,500 |
| Adaptive and immunity genes | 16,271 | 1,015 |
| Differentially expressed genes in hypothalamic arcuate nucleus | 107 | 17 |
| Upstream regulatory genes of differentially expressed genes | 308 | 31 |
| 11 selection sweep regions for litter size | 1,286 | 220 |
| Structural soundness genes | 607 | 224 |
| Predicted loss–of-function SNP | 617 | 376 |
| SNP from commercial genotyping platforms | ||
| Illumina Porcine SNP60 BeadArray | 49,710 | |
| Neogen Porcine GGPHD Array | 1,012 | |
| Affymetrix Axiom PigHD Array | 594 | |
| Total | 103,476 | 4,171 |
UNL = University of Nebraska-Lincoln; USMARC = U.S. Meat Animal Research Center.