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. 2019 Jul 30;10:3404. doi: 10.1038/s41467-019-11337-z

Fig. 4.

Fig. 4

Performance evaluation on the SCF(FBXL3)-BS3 dataset. a A real-world protein complex sample was searched using Kojak, pLink 1, and pLink 2. A total of 850 cross-linked PSMs were identified consistently by the three engines; these were used to be a new and fair standard dataset. b The sensitivities and precisions of the three engines. “ + E. coli” database contains sequences from 146 target proteins and the E. coli whole proteome database and “ + Worm” and “ + Human” are similar to “ + E. coli”. pLink 1 did not finish searching against the worm or the human entrapment databases within 1 week on a single computer when five variable modifications were set