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. 2019 Jul 24;12:182. doi: 10.3389/fnmol.2019.00182

Figure 1.

Figure 1

DNA methylation dynamics during retinal progenitor cell (RPC) differentiation into retinal neurons revealed that high methylation levels of photoreceptor phenotypes in the genomic DNA of RPCs (which emerged early in embryogenesis) are inherited by non-photoreceptor retinal neurons, but the DNA methylation levels are sharply reduced in photoreceptor phenotypes. The DNA methylation of non-photoreceptor phenotypes is low in all studied cell types. The % of hypermethylated genes regulating RPC and retinal neuron phenotype development and function in genomes of (A) murine retinal progenitors [whole genome bisulfite sequencing (WGBS) data obtained from the current study and NCBI-Gene Expression Omnibus (GEO) WGBS data (GSE87062) for E14.5 retinas] (B) human retinal progenitors (NCBI-GEO GSE87061) (C) mature retinal neurons [retinal ganglion cell (RGC) WGBS data obtained from the current study and NCBI-GEO WGBS data (GSE84589) for horizontal cell (HC), starburst amacrine cell (SBAC), cones, and rods]. (D) The generated heat map reflects DNA methylation dynamics in promoters of photoreceptor genes during RPC differentiation into retinal neurons.