Table 2.
Overhead and per objective function evaluation timings of stochastic algorithms for n=256,000
Method | Overhead | Per evaluation | Evaluation count | Total | |
---|---|---|---|---|---|
BOLT-LMM v2.1 | 34.63 | 35.83 | 4 | 177.95 | |
BOLT-LMM v2.3.2 | 10.82 | 20.07 | 4 | 91.09 | |
L_FOMC_REML | 89.87 | 2.06 | 6 | 102.21 | |
SLDF_REML { | with genotype matrix | 90.22 | 1.06 | 9 | 99.73 |
with precomputed GRM | 28.95 | 1.07 | 9 | 38.60 |
Data reflect trimmed mean wall clock time in minutes over 20 iterations per condition