Table 2.
Metagenome assembly and annotation statistics.
| Vellozia epidendroides | Barbacenia macrantha | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bulk Soil | Rhizosphere | Exposed Rock | Rhizosphere | |||||||||
| BS_R01 | BS_R02 | BS_R03 | RX_R1 | RX_R2 | RX_R3 | ER_R07 | ER_R08 | ER_R09 | RX_R7 | RX_R8 | RX_R9 | |
| Assembly length (bp) | 860,879,893 | 2,268,702 | 617,499,457 | 676,518,752 | 976,721,157 | 729,110,140 | 600,610,973 | 1,214,420,372 | 1,238,859,002 | 1,079,199,799 | 1,433,396,097 | 1,622,069,667 |
| Number of contigs | 1,972,903 | 2,270,457 | 1,351,797 | 1,486,891 | 1,645,436 | 1,645,662 | 1,377,103 | 2,326,200 | 2,637,801 | 2,492,579 | 2,699,276 | 2,952,973 |
| N50 | 614,578 | 598,284 | 407,288 | 452,936 | 317,068 | 503,998 | 432,757 | 569,015 | 717,185 | 61,759 | 628,284 | 673,204 |
| L50 | 406 | 490 | 432 | 287 | 645 | 416 | 408 | 516 | 441 | 405 | 520 | 551 |
| Max scaffold length (bp) | 59,246 | 1,680,496 | 258,893 | 27,505 | 662,532 | 1,657,979 | 327,896 | 651,618 | 2,357,837 | 61,759 | 2,793,540 | 1,186,326 |
| Genes | ||||||||||||
| RNA genes | 8,700 | 10,837 | 6,182 | 6,561 | 9,412 | 8,158 | 7,331 | 11,198 | 13,860 | 10,402 | 13,115 | 14,833 |
| rRNA genes | 2,332 | 2,630 | 1,866 | 1,809 | 1,815 | 2,368 | 2,019 | 2,360 | 3,399 | 2,706 | 2,488 | 3,100 |
| 5S rRNA | 146 | 252 | 133 | 137 | 252 | 172 | 151 | 249 | 294 | 212 | 264 | 310 |
| 16S rRNA | 711 | 786 | 533 | 545 | 540 | 699 | 657 | 672 | 1,027 | 798 | 707 | 945 |
| 18S rRNA | 32 | 40 | 54 | 51 | 54 | 42 | 22 | 84 | 68 | 67 | 84 | 69 |
| 23S rRNA | 1,366 | 1,477 | 1,031 | 987 | 870 | 1,394 | 1,155 | 1,214 | 1,891 | 1,514 | 1,300 | 1,665 |
| 28S rRNA | 77 | 75 | 115 | 89 | 99 | 61 | 34 | 141 | 119 | 115 | 133 | 111 |
| tRNA genes | 6,368 | 8,207 | 4,316 | 4,752 | 7,597 | 5,790 | 5,312 | 8,838 | 10,461 | 7,696 | 10,627 | 11,733 |
| Protein coding genes | 2,297,228 | 2,791,995 | 1,590,322 | 1,754,025 | 2,150,110 | 1,926,163 | 1,628,300 | 2,880,790 | 3,166,526 | 2,901,223 | 3,366,379 | 3,764,853 |
| with Product Name | 2,305,928 | 2,802,832 | 1,596,504 | 1,760,586 | 2,159,522 | 1,934,321 | 1,635,631 | 2,891,988 | 3,180,386 | 2,911,625 | 3,379,494 | 3,779,686 |
| with COG | 1,191,680 | 1,496,157 | 825,877 | 942,870 | 1,186,733 | 1,014,644 | 874,346 | 1,446,673 | 1,606,760 | 1,515,597 | 1,722,337 | 2,006,246 |
| with Pfam | 1,109,275 | 1,412,963 | 768,892 | 875,344 | 1,126,410 | 943,934 | 805,481 | 1,396,975 | 1,521,778 | 1,418,186 | 1,659,192 | 1,927,535 |
| with KO | 913,196 | 1,137,348 | 621,315 | 720,502 | 888,464 | 773,464 | 675,421 | 1,076,987 | 1,224,775 | 1,174,302 | 1,300,850 | 1,519,429 |
| with Enzyme | 550,718 | 672,962 | 377,026 | 431,594 | 511,776 | 472,682 | 410,088 | 657,136 | 753,442 | 715,698 | 788,012 | 917,051 |
| with MetaCyc | 351,479 | 427,878 | 241,918 | 276,579 | 321,172 | 304,400 | 261,797 | 422,831 | 483,869 | 459,140 | 508,562 | 585,951 |
| with KEGG | 569,005 | 700,632 | 386,214 | 449,908 | 539,886 | 484,161 | 423,557 | 663,022 | 763,289 | 732,531 | 804,817 | 940,101 |
| COG clusters | 4,106 | 4,227 | 4,002 | 4,075 | 4,182 | 4,133 | 4,115 | 4,281 | 4,344 | 4,240 | 4,327 | 4,375 |
| Pfam clusters | 6,383 | 7,003 | 5,946 | 6,250 | 6,890 | 6,355 | 6,261 | 7,400 | 7,263 | 7,030 | 7,870 | 7,445 |
| CRISPR count | 375 | 350 | 233 | 272 | 280 | 308 | 220 | 741 | 666 | 502 | 904 | 755 |
BS = bulk soil, ER = exposed rock.