Table 1.
Performance of Various Localization Predictors as Employed in This Study
| ASAFind | ASAFind+ | HECTAR | TargetP - mTP |
HECTAR - mTP |
MultiLoc2 - mTP |
||||
|---|---|---|---|---|---|---|---|---|---|
| (s) | (p) | (s) | (p) | (s) | (p) | ||||
| C. velia | |||||||||
| THRESHOLD | 1.4 | 1.4 | 0.05 | 0.35 | 0.8 | 0.14 | 0.41 | 0.25 | 0.95 |
| SENSITIVITY | 0.774 | 0.830 | 0.769 | 0.757 | 0.586 | 0.748 | 0.586 | 0.748 | 0.361 |
| PRECISION | 0.921 | 0.921 | 0.872 | 0.375 | 0.844 | 0.529 | 0.855 | 0.485 | 0.736 |
| V. brassicaformis | |||||||||
| THRESHOLD | 1 | 1 | 0.16 | 0.56 | 0.81 | 0.18 | 0.37 | 0.64 | 0.89 |
| SENSITIVITY | 0.759 | 0.897 | 0.744 | 0.757 | 0.586 | 0.748 | 0.559 | 0.755 | 0.582 |
| PRECISION | 0.886 | 0.916 | 0.967 | 0.712 | 0.855 | 0.664 | 0.861 | 0.697 | 0.842 |
Note.—ASAFind and HECTAR-plastid were used for plastid reference assessment. Note that ASAFind has a cumulative score, with our data reaching up to values of 6. ASAFind+ denotes ASAFind with species-specific bit score matrices designed with C. velia and V. brassicaformis plastid references. TargetP, HECTAR-mitochondrion, and MultiLoc2 were used for mitochondrial predictions and two thresholds are presented for these predictors, one aimed at higher sensitivity (s, 75%), the other aimed at high precision (p, 85%).