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. 2019 Mar 28;59(4):1410–1421. doi: 10.1021/acs.jcim.8b00820

Table 2. Substitution and Insertion/Deletion Costs Used in the GED and SED Calculation.

matrix of substitution costs
  [0] [1] [2] [3] [4] [5] [6] [7] [0, 1] [0, 2] [0, 3] [1, 2] [1, 3] [2, 3] [0, 1, 2] - =
[0] 0 2 2 2 2 2 2 3 1 1 1 2 2 2 1 2 3 3
[1] 2 0 2 2 2 2 2 3 1 2 2 1 1 2 1 2 3 3
[2] 2 2 0 2 2 2 2 3 2 1 2 1 2 1 1 2 3 3
[3] 2 2 2 0 2 2 2 3 2 2 1 2 1 1 2 2 3 3
[4] 2 2 2 2 0 2 2 3 2 2 2 2 2 2 2 2 3 3
[5] 2 2 2 2 2 0 2 3 2 2 2 2 2 2 2 2 3 3
[6] 2 2 2 2 2 2 0 3 2 2 2 2 2 2 2 2 3 3
[7] 3 3 3 3 3 3 3 0 3 3 3 3 3 3 3 3 3 3
[0, 1] 1 1 2 2 2 2 2 3 0 2 2 2 2 2 2 2 3 3
[0, 2] 1 2 1 2 2 2 2 3 2 0 2 2 2 2 2 2 3 3
[0, 3] 1 2 2 1 2 2 2 3 2 2 0 2 2 2 2 2 3 3
[1, 2] 2 1 1 2 2 2 2 3 2 2 2 0 2 2 2 2 3 3
[1, 3] 2 1 2 1 2 2 2 3 2 2 2 2 0 2 2 2 3 3
[2, 3] 2 2 1 1 2 2 2 3 2 2 2 2 2 0 2 2 3 3
[0, 1, 2] 1 1 1 2 2 2 2 3 2 2 2 2 2 2 0 2 3 3
- 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 0 3 3
= 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 0 3
3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 0
insertion/deletion costs
insert 1 1 1 1 1 1 0.5 0.5 1 1 1 1 1 1 1 0.1 1 1
delete 1 1 1 1 1 1 0.5 0.5 1 1 1 1 1 1 1 0.1 1 1