Table 1.
Rupture force (Funfold, pN), unfolding rate constant (kunfod, s−1), unfolding energy barrier (ΔG†unfold, kcal/mol)’ and distance from the folded to the transition state (x†) of telomeric DNA G-quadruplex via different unfolding geometries without and with 100 nM L2H2–6OTD monomer
Variable | Ligand | Top | Middle | Bottom | L2–3' | 5’-L2 | L1–3' | 5’-L3 | L1-L3 |
---|---|---|---|---|---|---|---|---|---|
Funfold (pN) |
No | 33±2.4 | 21±0.5 | 32±1.9 | 44±1.6 | 42±0.9 | 34±0.9 | 34±1.3 | 46±0.5 |
Yes | 39.3±1.1 | 32.2±1.8 | 36.5±1.9 | 40.4±1.5 | 32.7±0.5 | 34.3±1.8 | 34.7±1.0 | 38±1.2 | |
kunfold (s−1) |
No | 0.019±0.001 | 0.053±0.005 | 0.018±0.001 | 0.0048* | 0.0055* | 0.0111* | 0.015* | 0.0009* |
Yes | 0.013±0.003 | 0.029±0.004 | 0.013±0.002 | 0.007±0.003 | 0.016±0.005 | 0.015±0.004 | 0.019±0.001 | 0.006±0.001 | |
ΔG†unfold,
(kcal/mol) |
No | 14.8±0.8 | 15.3±0.2 | 12.9±0.7 | 19±3.0* | 17.5±0.4* | 17.1±2.0* | 21* | 21±1.0* |
Yes | 19.8±0.3 | 20.6±1.3 | 19.7±0.9 | 14.8±1.0 | 14.3±0.7 | 15.1±1.2 | 15.6±0.6 | 13.3±1.2 | |
x† (nm) |
No | 0.10±0.01 | 0.12±0.01 | 0.11±0.01 | 0.10* | 0.10* | 0.11* | 0.08* | 0.14* |
Yes | 0.09±0.01 | 0.08±0.01 | 0.09±0.01 | 0.12±0.02 | 0.11±0.02 | 0.11±0.01 | 0.09±0.01 | 0.14±0.04 |
data taken from reference[2].