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. Author manuscript; available in PMC: 2020 Jan 14.
Published in final edited form as: Angew Chem Int Ed Engl. 2018 Dec 12;58(3):877–881. doi: 10.1002/anie.201811046

Table 1.

Rupture force (Funfold, pN), unfolding rate constant (kunfod, s−1), unfolding energy barrier (ΔGunfold, kcal/mol)’ and distance from the folded to the transition state (x) of telomeric DNA G-quadruplex via different unfolding geometries without and with 100 nM L2H2–6OTD monomer

Variable Ligand Top Middle Bottom L2–3' 5’-L2 L1–3' 5’-L3 L1-L3
Funfold
(pN)
No 33±2.4 21±0.5 32±1.9 44±1.6 42±0.9 34±0.9 34±1.3 46±0.5
Yes 39.3±1.1 32.2±1.8 36.5±1.9 40.4±1.5 32.7±0.5 34.3±1.8 34.7±1.0 38±1.2
kunfold
(s−1)
No 0.019±0.001 0.053±0.005 0.018±0.001 0.0048* 0.0055* 0.0111* 0.015* 0.0009*
Yes 0.013±0.003 0.029±0.004 0.013±0.002 0.007±0.003 0.016±0.005 0.015±0.004 0.019±0.001 0.006±0.001
ΔGunfold,
(kcal/mol)
No 14.8±0.8 15.3±0.2 12.9±0.7 19±3.0* 17.5±0.4* 17.1±2.0* 21* 21±1.0*
Yes 19.8±0.3 20.6±1.3 19.7±0.9 14.8±1.0 14.3±0.7 15.1±1.2 15.6±0.6 13.3±1.2
x
(nm)
No 0.10±0.01 0.12±0.01 0.11±0.01 0.10* 0.10* 0.11* 0.08* 0.14*
Yes 0.09±0.01 0.08±0.01 0.09±0.01 0.12±0.02 0.11±0.02 0.11±0.01 0.09±0.01 0.14±0.04
*:

data taken from reference[2].

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