Table 2. An overview of KO, KAO, GA20ox, and C20-GA2ox mutants in O. sativa and Arabidopsis.
Mutant | O. sativa | Arabidopsis | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
Symbol | Id | Mutation Type | Phenotype | Reference | Symbol | Id | Mutation Type | Phenotype | Reference | |
KO | OsKO1 | Os06g0569900 | Cas9 knockout | Severe dwarf, sterile | This result | AtKO | AT5G25900 | 35S overexpression | Similar to wild type | (Swain et al., 2005) |
OsKO2 | Os06g0570100 | Cas9 knockout | N/A | This result | ||||||
Spontaneous d35: a single nucleotide substitution | Semidwarf | (Itoh et al., 2004) | ||||||||
Tos17 retrotransposon: insertion into exon 4 | Severe dwarf, sterile | (Sakamoto et al., 2004) | ||||||||
OsKO3 | Os06g0569500 | Cas9 knockout | Infected leaves, low setting rate | This result | A single nucleotide substitution introduces a stop codon | Severe dwarf | (Helliwell et al., 1998) | |||
OsKO4 | Os06g0568600 | Cas9 knockout | Low setting rate | This result | ||||||
OsKO5 | Os06g0570600a | Cas9 knockout | Severe dwarf, sterile | This result | ||||||
KAO | OsKAO | Os06g0110000 | Cas9 knockout | Severe dwarf, sterile | This result | AtKAO1 | AT1G05160 | T-DNA insertion knockout | Similar to wild type (severe dwarf double knockout) | (Regnault et al., 2014) |
Tos17 retrotransposon: insertion into exon 5 or 6 | Severe dwarf, sterile | (Sakamoto et al., 2004) | AtKAO2 | AT2G32440 | T-DNA insertion knockout | Similar to wild type (severe dwarf double knockout) | (Regnault et al., 2014) | |||
GA20ox | OsGA20ox1 | Os03g0856700 | Cas9 knockout | N/A | This result | AtGA20ox1 | AT4G25420 | Spontaneous: a single nucleotide deletion | Alpine dwarf | (Luo et al., 2015) |
35S overexpression/ RNAi | Tall, low setting rate/ semidwarf | (Oikawa et al., 2004) | T-DNA insertion knockout | Semidwarf | (Rieu et al., 2008; Plackett et al., 2012) | |||||
OsGA20ox2 | Os01g0883800 | Cas9 knockout | Semidwarf, low setting rate | This result | AtGA20ox2 | AT5G51810 | T-DNA insertion knockout | Delayed flowering, shorter siliques | (Rieu et al., 2008; Plackett et al., 2012) | |
Spontaneous sd1: 383-bp deletion | Semidwarf | (Sasaki et al., 2002) | AtGA20ox3 | AT5G07200 | Ethyl-methane sulfonate Mutagenesis truncated protein and amino acid substitution | Little amplification on phenotype of ga20ox1/2 | (Plackett et al., 2012) | |||
OsGA20ox3 | Os07g0169700 | Cas9 knockout | Semidwarf, low setting rate | This result | ||||||
35S overexpression/ RNAi | Tall, susceptible/ semidwarf, low setting rate | (Qin et al., 2013) | AtGA20ox4 | AT1G60980 | Natural 1-bp deletion | No altered phenotype | (Plackett et al., 2012) | |||
OsGA20ox4 | Os05g0421900 | Cas9 knockout | Semidwarf, low setting rate | This result | AtGA20ox5 | AT1G44090 | T-DNA insertion knockout | No altered phenotype | (Plackett et al., 2012) | |
C20-GA2ox | OsGA2ox5 | Os07g0103500 | Cas9 knockout | Large and chalky seeds, low setting rate | This result | AtGA2ox7 | AT1G50960 | T-DNA insertion knockout | GA excessive | (Schomburg et al., 2003) |
35S overexpression | Severe dwarf, irregularly shaped and small seeds | (Shan et al., 2014a) | 35S overexpression | Dwarf | (Schomburg et al., 2003) | |||||
OsGA2ox6 | Os04g0522500 | Cas9 knockout | Large and chalky seeds | This result | ||||||
35S overexpression | Dwarf, normal flowering and seed production | (Huang et al., 2010) | AtGA2ox8 | AT4G21200 | T-DNA insertion knockout | GA excessive | (Schomburg et al., 2003) | |||
OsGA2ox9 | Os02g0630300 | Cas9 knockout | Low setting rate | This result | 35S overexpression | Dwarf | (Schomburg et al., 2003) | |||
35S overexpression | Semidwarf, slightly decreased fertility | (Lo et al., 2008) |
Note that Os06g0570600 and Os06g0570566 have been considered to be “OsKOL1” by Itoh et al. (2004). Here, we call it “OsKO5.”