NGS platform | Input | Readout | Advantages and/or disadvantages |
---|---|---|---|
Illumina | • Short fragments of DNA • cDNA |
Polymerase with an optical readout | • Low error rate (2%) • Widely used |
Ion Torrent | • Short fragments of DNA • cDNA |
Ionic disturbance readout | • Fast readout • Low error rate (2%) |
PacBio | • Long fragments of DNA • RNA |
Polymerase with an optical readout | • Low error rate (<1%) on multiple passes • Real time • Fast |
Nanopore | • Long fragments of DNA • RNA |
Protein pore with an electrical readout | • Real time • Fast • High error rate (13%) |
Chromium 10×: linked reads | • Long fragments of DNA • RNA |
Polymerase with an optical readout | • Uses molecular barcodes to tag reads that come from the same long DNA fragments • Uses Illumina-based short fragment sequencing |