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. Author manuscript; available in PMC: 2019 Dec 1.
Published in final edited form as: Nat Rev Rheumatol. 2019 Jun;15(6):327–339. doi: 10.1038/s41584-019-0217-7
NGS platform Input Readout Advantages and/or disadvantages
Illumina • Short fragments of DNA
• cDNA
Polymerase with an optical readout • Low error rate (2%)
• Widely used
Ion Torrent • Short fragments of DNA
• cDNA
Ionic disturbance readout • Fast readout
• Low error rate (2%)
PacBio • Long fragments of DNA
• RNA
Polymerase with an optical readout • Low error rate (<1%) on multiple passes
• Real time
• Fast
Nanopore • Long fragments of DNA
• RNA
Protein pore with an electrical readout • Real time
• Fast
• High error rate (13%)
Chromium 10×: linked reads • Long fragments of DNA
• RNA
Polymerase with an optical readout • Uses molecular barcodes to tag reads that come from the same long DNA fragments
• Uses Illumina-based short fragment sequencing