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. Author manuscript; available in PMC: 2020 Aug 15.
Published in final edited form as: Neuroimage. 2019 May 12;197:818–826. doi: 10.1016/j.neuroimage.2019.04.078

Figure 1.

Figure 1.

Key modules from HCP minimal processing pipelines (left) were adapted to create the ciftify preprocessing workflow (right). Within the fmriprep_ciftify BIDSapp the prerequisite processing steps listed here are performed by fmriprep. Additional usage options, including the ability of the user to input pre-calculated transforms to standard space, are given at https://edickie.github.io/ciftify/.