TABLE 1.
Gene IDb | Gene rank by algorithm |
|||
---|---|---|---|---|
MAGeCK1 | MAGeCK2 | RIGER 1 | RIGER 2 | |
IFI6 | 1 | 1 | 1 | 1 |
ISG20 | 2 | 2 | 2 | 26 |
ZCCHC6 | 3 | 236 | 3 | 85 |
IFN-λ2 | 4 | 3 | 9 | 64 |
HELZ2 | 5 | 6 | 3 | 85 |
IFN-λR1 | 6 | 4 | 6 | 40 |
EGFR | 7 | 18,134 | 10,142 | 17,934 |
IRF1 | 8 | 7 | 140 | 76 |
MAVS | 9 | 127 | 847 | 19,704 |
TRIM25 | 10 | 89 | 228 | 788 |
MFSD2A | 14 | 3,966 | 149 | 10,188 |
PITPNB | 24 | 927 | 647 | 16,783 |
A comparison of the 2 screen repeats and two different analysis algorithms used RIGER and MAGeCK. Values represent gene ranks assigned by the corresponding algorithm in the different repeats. Highest-ranking genes are sorted relative to the results of MAGeCK applied on the first screen. The gene ranks of the first six candidates are robust across the replicates and the algorithm used.
ID, identifier.