TABLE 3.
Sindbis virus genotype I strains included in this study
| Isolate | Yr of isolation | Location(s) (region)a | Isolation sourceb | E2 GenBank accession no. | GenBank accession no. | Reference(s) |
|---|---|---|---|---|---|---|
| E597 | 2002 | Sweden (N) | Aedes rossicus | MK045224 | This study | |
| E594 | 2002 | Sweden (N) | A. rossicus | MK045225 | This study | |
| 84M140 | 1984 | Sweden (E) | Culiseta morsitans | MK045226 | This study | |
| 83M108 | 1983 | Sweden (E) | Culex pipiens/Cx. torrentium | MK045227 | This study | |
| 83M107 | 1983 | Sweden (E) | Cs. morsitans | MK045228 | This study | |
| Vmork1/92 | 1983 | Norway | Aedes spp. | U62467 | MK045229 | This study, 22 |
| 86828 | 1985 | Sweden (E) | Cs. morsitans | MK045230 | This study | |
| 95M116 | 1995 | Sweden (N) | A. cinereus | FJ744539 | MK045231 | This study, 10 |
| 86752 | 1985 | Sweden (S) | Cx. pipiens/Cx. torrentium | MK045232 | This study | |
| 85M78 | 1985 | Sweden (E) | A. cinereus | U62460 | MK045233 | This study, 22 |
| 85M94 | 1985 | Sweden (E) | Cx. pipiens/Cx. torrentium | U62469 | MK045234 | This study, 22 |
| E917 | 2002 | Sweden (N) | Cx. pipiens/Cx. torrentium | MK045235 | This study | |
| 85M68 | 1985 | Sweden (E) | Cs. morsitans | U62452 | MK045236 | This study, 22 |
| 86520P3 | 1985 | Sweden (S) | Cx. pipiens/Cx. torrentium | MK045237 | This study | |
| E945 | 2002 | Sweden (N) | A. rossicus | MK045238 | This study | |
| 09_M_991 | 2009 | Sweden (N) | Cx. torrentium | KF297653 | MK045239 | This study, 45 |
| F231 | 2003 | Sweden (N) | A. cinereus | MK045240 | This study | |
| 09_M_519 | 2009 | Sweden (N) | Cx. pipiens | KF297652 | MK045241 | This study, 45 |
| 09_M_564 | 2009 | Sweden (N) | Cx. torrentium | KF297646 | MK045242 | This study, 45 |
| 09_M_526 | 2009 | Sweden (N) | Cx. torrentium | KF297644 | MK045243 | This study, 45 |
| 85M134 | 1985 | Sweden (E) | Cx. pipiens/Cx. torrentium | U62444 | MK045244 | This study |
| 09_M_358 | 2009 | Sweden (N) | Cx. torrentium | KF297651 | MK045245 | This study, 45 |
| SAAR_18141 | 1976 | South Africa | Culex univittatus | U62471 | MK045246 | This study, 22 |
| AR18132 | 1974 | South Africa | Cx. univittatus | U62463 | MK045247 | This study, 22 |
| MP684 | 1960 | Uganda | Mansonia fuscopennata | U62480 | MK045248 | This study, 22 |
| 4251SM6 | 1969 | Cameroon | Mosquito | AF339477 | MK045249 | This study; R. M. Kinney and M. Pfeffer, unpublished data |
| SAAR_6071 | 1964 | South Africa | Cx. univittatus | U62479 | MK045250 | This study, 22 |
| SK2_SM7V1 | 1972 | Slovakia | Cricetus cricetus (M) | U62458 | MK045251 | This study, 22 |
| AZ_16 | 1977 | Russia, Azerbaijan | Nycticorax nycticorax (B) | U62464 | MK045252 | This study, 22 |
| GREIS | 1975 | Italy | Hyalomma marginatum (T) | U62456 | MK045253 | This study, 22 |
| M1855 | 1967 | Israel | Cx. pipiens molestus | U62473 | MK045254 | This study, 22 |
| R2_SM7V1 | 1975 | Slovakia | Rana ridibunda (A) | U62459 | MK045255 | This study, 22 |
| 1038 | 1964 | Israel | Streptopelia turtur (B) | U62443 | MK045256 | This study, 22 |
| SA80_480 | 1980 | Saudi Arabia | Cx. univittatus | FJ744536 | MK045257 | This study, 10 |
| SA80_394 | 1980 | Saudi Arabia | Cx. univittatus | FJ744535 | MK045258 | This study, 10 |
| SA80_370 | 1980 | Saudi Arabia | Cx. univittatus | FJ744534 | MK045259 | This study, 10 |
| BNI_10865 | 2016 | Germany | Cx. pipiens | MF589985 | 6 | |
| 15Z03121 | 2015 | Germany | Cx. torrentium | MG779533 | 6 | |
| LEIV_9298 | 1983 | Russia | Mosquito | JQ771799 | 17 | |
| Kiihtelysvaara2002 | 2002 | Finland | Homo sapiens | JQ771798 | 17 | |
| Johannes2002 | 2002 | Finland | Homo sapiens | JQ771797 | 17 | |
| Edsbyn | 1982 | Sweden | Mosquito | M69205 | 58 | |
| Ilomantsi2002B | 2002 | Finland | Homo sapiens | JQ771795 | 17 | |
| Ilomantsi2002A | 2002 | Finland | Homo sapiens | JQ771794 | 17 | |
| 28_9 | 2009 | Germany | Cx. torrentium | GU361118 | 41 | |
| 5_3 | 2009 | Germany | Anopheles maculipennis | GU361116 | 41 | |
| Ilomantsi2002C | 2002 | Finland | Homo sapiens | JQ771796 | 17 | |
| Lovanger | 2013 | Sweden (L) | Cs. morsitans | KF737350 | 16 | |
| Z158523 | 2013 | Germany | Cx. pipiens | MG779535 | 6 | |
| Berlin2010A | 2010 | Germany | Corvus corone cornix (B) | JX570540 | 59 | |
| Ilomantsi2005M | 2005 | Finland | Mosquito | JQ771793 | 17 | |
| NVS_305 | 2007 | Kenya | Culex vansomereni | KY616988 | 60 | |
| ArB7761 | 1977 | Central African Republic | Cx. cinereus | MH212167 | 46 | |
| HB741570 | 1975 | Central African Republic | Homo sapiens | MF409178 | V. Tricou, E. Nakoune, B. Selekon, M. Kazanji, and N. Berthet, unpublished data | |
| Babanki | 1969 | Cameroon | Mosquito | HM147984 | 47 | |
| KSM_1008 | 2007 | Kenya | Culex spp. | KY616986 | 60 | |
| BUD_12001 | 2010 | Kenya | Cx. univittatus | KY616984 | 60 | |
| Girdwood_2017 | 1962 | South Africa | Homo sapiensc | MF459683 | 61 | |
| Girdwood_SA | 1962 | South Africa | Homo sapiensc | U38304 | 62 | |
| YN87448 | 1998 | China | Unknown | AF103734 | G. L. Zhou, G. D. Liang, L. Li, S. H. Fu, Q. Jin, H. L. Zhang, W. L. Huang, and Y. D. Hou, unpublished data | |
| Prototype AR399 | 1952 | Egypt | Cx. pipiens/Cx. univittatus | J02363 | 63 | |
| S_A_AR86 | 1954 | South Africa | Culex spp. | U38305 | 62 | |
| H7 | 2013 | Germany | Cx. pipiens | MG779534 | 6 | |
| BONI_584 | 2013 | Kenya | Aedes tricholabis | KY616985 | 60 | |
| BONI_566 | 2013 | Kenya | A. ochraceus | KY616987 | 60 | |
| ArB489 | 1985 | Central African Republic | Arthropod | MF409177 |
a
Letters in parentheses indicate regions within Sweden shown in Fig. 1 (N, Nedre Dalälven; E, Edsbyn; S, Sundsvall; L, Lövånger).
b
Letters in parentheses indicate the isolation source M, mammal; B, bird; T, tick; A, amphibian.
c
This strain was isolated from a human in 1962 and sequenced twice.