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. 2019 Jul 31;75(Pt 8):753–763. doi: 10.1107/S2059798319009392

Figure 2.

Figure 2

The side-chain descriptor. (a) Connected component of a graph (shown in red) built on points sampled in a 2.8 Å resolution 2mF oDF o density map at a 1.8σ density level calculated for a refined model of SAM synthetase 2 (PDB entry 2ydx). The side chain of the Trp2016 residue from chain C (Trp2016C) is shown in black. (b) A comparison between the change in median side-chain density volumes (with 80% confidence intervals) at different map thresholds for tryptophan and valine residues in the training set. (c) A comparison of the median side-chain density volumes for all residue types.