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. 2019 Feb 28;15(2):121–130. doi: 10.6026/97320630015121

Table 4. Drug-drug comparison .

Established Drug: Methotrexate Virtual Screened Drug (PubChem id: 122677576)
Energy overview:Descriptors MolDock Score Rerank Score MolDock Score Rerank Score
Total Energy -173.204 -111.978 -195.561 -143.154
External Ligand interactions -185.718 -132.69 -209.335 -172.055
Protein - Ligand interactions -185.718 -132.69 -209.335 -172.055
Steric (by PLP) -166.874 -114.476 -199.728 -137.014
Steric (by LJ12-6) -3.29 -27.433
Hydrogen bonds -18.843 -14.924 -9.606 -7.608
Hydrogen bonds (no directionality) 0 0
Electrostatic (short range) 0 0 0 0
Electrostatic (long range) 0 0 0 0
Cofactor – Ligand 0 0 0 0
Steric (by PLP) 0 0
Steric (by LJ12-6) 0 0
Hydrogen bonds 0 0 0 0
Electrostatic 0 0 0 0
Water - Ligand interactions 0 0 0 0
Internal Ligand interactions 12.513 20.712 13.774 28.9
Torsional strain 6.417 6.019 14.433 13.538
Torsional strain (sp2-sp2) 1.133 1.451
Hydrogen bonds 0 0
Steric (by PLP) 11.605 1.996 7.111 1.223
Steric (by LJ12-6) 11.565 12.688
Electrostatic 0 0 0 0
Soft Constraint Penalty 0 0
Search Space Penalty 0 0