Table 2.
Predicted binding free energy by molecular dynamics (MD) simulations.
Complex | MM/GBSA ΔGGBTOT (kcal/moL) | RMSD (mean ± SD) | |||||
---|---|---|---|---|---|---|---|
25–29 ns | 30–34 ns | 35–39 ns | 40–44 ns | 45–49 ns | (mean ± SD) | ||
IaAS1_alpha | −29.65 | −30.26 | −30.25 | −28.87 | −27.86 | −29.38 ± 1.02 | 4.21 ± 0.13 |
IaAS1_beta | −26.06 | −25.44 | −24.40 | −25.01 | −24.60 | −25.10 ± 0.67 | 4.92 ± 0.19 |
IaAS2_alpha | −21.29 | −21.74 | −21.14 | −22.41 | −23.16 | −21.95 ± 0.84 | 3.61 ± 0.19 |
IaAS2_bet | −32.54 | −32.86 | −31.33 | −30.98 | −29.96 | −31.54 ± 1.18 | 3.34 ± 0.16 |