Table 1.

Results of gene identification in the genome of phage Lambda. Sensitivity and specificity are rounded to the nearest 0.5%.

Annotation Method	Positives	True Positives	False Positives	False Negatives	True Negatives	Sensitivity	Specificity
Glimmer	67	63	4	10	541	86.5%	99.5%
GeneMark	61	58	3	15	542	79.5%	99.5%
GeneMark hmm	66	62	4	11	541	85%	99.5%
GeneMark S	61	58	3	15	542	79.5%	99.5%
Heuristic GeneMark	61	58	3	15	542	79.5%	99.5%
GeneMark S2	60	58	2	15	543	79.5%	99.5%
Prodigal	61	55	6	18	539	75.5%	99%
PHANOTATE	88	62	26	11	519	85%	95%
Manual	69	65	4	8	541	89%	99%