Alignment of the amino acid sequences for the original library L9 and GAF-CaMP2 calcium indicator. Alignment numbering follows that of original library L9. Mutations in GAF-CaMP2 related to the initial library L9 including linkers between fluorescent and indicator parts are highlighted in yellow. The residues which are suggested within 4.5, 4.5–5.5, and 5.5–6.5 Å surrounding the BV chromophore according to the X-ray structure of PaBphP (3C2W) are highlighted in grey, cyan, and red colors, respectively. Residues in the CaM-part that assumed to bind Ca2+ ions are selected with stars. M13-peptide is underlined. Cys-residue 289 that is suggested to be covalently bound to the chromophore of GAF-FP protein is selected with bold.