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. 2019 Jul 7;8(7):987. doi: 10.3390/jcm8070987

Figure 2.

Figure 2

Amplicon and whole genome (shotgun) metagenomic sequencing. In amplicon sequencing, primers are used to amplify marker regions. Whole genome sequencing captures all the genetic information within a sample. Only shotgun metagenomics can identify viruses and offer resolution at the strain level.