Table 1.
Summary of RNA sequencing (RNA-seq) data in four stages of preadipocyte differentiation. HQ—high quality.
| Sample | Before Filtering | After Filtering | Unique Mapped Reads | Multiple Mapped Reads | Mapping Ratio | ||
|---|---|---|---|---|---|---|---|
| Clean Reads Number | Clean Q30 Bases (%) | HQ Clean Reads Number | Clean Q30 Bases (%) | ||||
| A0d | 36,419,702 | 33,808,409 (92.83%) | 35,253,720 | 33,364,121 (94.64%) | 32,064,753 (90.95%) | 274,708 (0.78%) | 91.73% |
| B0d | 31,200,494 | 29,172,462 (93.50%) | 30,099,248 | 28,606,325 (95.04%) | 27,329,518 (90.80%) | 174,318 (0.58%) | 91.38% |
| C0d | 26,486,876 | 24,717,553 (93.32%) | 25,638,168 | 24,333,185 (94.91%) | 23,365,096 (91.13%) | 190,142 (0.74%) | 91.88% |
| A2d | 28,087,146 | 26,264,290 (93.51%) | 27,127,016 | 25,784,229 (95.05%) | 24,631,732 (90.80%) | 214,138 (0.79%) | 91.59% |
| B2d | 27,412,180 | 25,644,094 (93.55%) | 26,554,122 | 25,234,382 (95.03%) | 24,196,924 (91.12%) | 151,568 (0.57%) | 91.69% |
| C2d | 26,603,022 | 24,828,600 (93.33%) | 25,547,810 | 24,262,755 (94.97%) | 23,048,014 (90.22%) | 146,522 (0.57%) | 90.79% |
| A4d | 30,269,944 | 28,196,453 (93.15%) | 29,243,938 | 27,734,951 (94.84%) | 26,631,402 (91.07%) | 215,232 (0.74%) | 91.80% |
| B4d | 28,011,286 | 26,212,961 (93.58%) | 27,141,124 | 25,808,495 (95.09%) | 24,797,742 (91.37%) | 167,664 (0.62%) | 91.98% |
| C4d | 33,020,078 | 30,497,344 (92.36%) | 30,913,550 | 29,185,483 (94.41%) | 46,107,395 (90.56%) | 416,494 (0.82%) | 91.38% |
| A8d | 29,540,224 | 27,590,569 (93.40%) | 28,581,192 | 27,146,416 (94.98%) | 25,946,229 (90.78%) | 196,022 (0.69%) | 91.47% |
| B8d | 38,772,832 | 36,198,316 (93.36%) | 37,484,166 | 35,598,712 (94.97%) | 34,076,825 (90.91%) | 274,396 (0.73%) | 91.64% |
| C8d | 26,907,478 | 25,118,131 (93.35%) | 26,004,832 | 24,696,789 (94.97%) | 23,582,654 (90.69%) | 206,442 (0.79%) | 91.48% |
A, B, and C refer to the three Landrace pigs. 0d, 2d, 4d, and 8d refer to the different time points in days during adipocyte differentiation.