Table 1.
Senescence‐associated protein degradation genes (PDGs) in switchgrass leaves and stems and their corresponding Arabidopsis homologs (see Supporting Information Table S4 for more details)
| mapman BinCode | BinName | In leaves | In stems | ||
|---|---|---|---|---|---|
| PviUT sequence ID | Arabidopsis homolog | PviUT sequence ID | Arabidopsis homolog | ||
| 29.5 | protein.degradation | AP13CTG02178 | AT1G23440 | AlamCTG13082 | AT4G33090 |
| AP13CTG23243 | AT2G18600 | AP13CTG42013 | AT4G33090 | ||
| AlamCTG13082 | AT4G33090 | ||||
| AP13CTG10608 | AT4G33090 | ||||
| AP13CTG42013 | AT4G33090 | ||||
| 29.5.11 | protein.degradation.ubiquitin | AP13CTG03474 | AT4G24690 | ||
| 29.5.11.1 | protein.degradation.ubiquitin.ubiquitin | AP13ISTG55622 | AT5G03240 | AP13CTG13659 | AT5G55160 |
| 29.5.11.2 | protein.degradation.ubiquitin.E1 | AP13CTG00940 | AT5G06460 | ||
| 29.5.11.3 | protein.degradation.ubiquitin.E2 | AP13CTG04847 | AT1G63800 | ||
| 29.5.11.4.1 | protein.degradation.ubiquitin.E3.HECT | AP13CTG29791 | AT4G12570 | ||
| AP13CTG19106 | AT4G12570 | ||||
| 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | AP13CTG21304 | AT1G02610 | AP13CTG21304 | AT1G02610 |
| AP13ISTG65978 | AT1G08050 | AP13ISTG73401 | AT1G23030 | ||
| AP13ISTG73401 | AT1G23030 | AP13CTG07816 | AT1G49850 | ||
| AP13CTG32069 | AT3G07370 | AP13CTG34502 | AT2G15580 | ||
| AP13CTG31154 | AT3G07370 | AP13ISTG62924 | AT2G20030 | ||
| AP13ISTG36348 | AT3G47160 | AP13ISTG68749 | AT2G42360 | ||
| AP13CTG01797 | AT5G10650 | AP13CTG24769 | AT3G16720 | ||
| AP13CTG10780 | AT5G10650 | AP13ISTG60909 | AT3G46620 | ||
| AP13CTG18505 | AT5G24870 | AP13ISTG35994 | AT4G35840 | ||
| AP13CTG09175 | AT5G41350 | AP13ISTG69037 | AT5G01830 | ||
| AP13ISTG46430 | AT2G30580 | AP13ISTG32938 | AT5G63970 | ||
| AP13CTG21021 | AT1G73950 | AP13CTG28718 | AT5G63970 | ||
| 29.5.11.4.3.1 | protein.degradation.ubiquitin.E3.SCF.SKP | AP13ISTG38065 | AT5G59140 | ||
| 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | AP13ISTG66687 | AT1G68050 | AP13CTG01225 | AT1G14330 |
| AP13ISTG73845 | AT1G80440 | AP13CTG59148 | AT1G21410 | ||
| AP13ISTG73847 | AT1G80440 | AP13CTG05982 | AT1G21410 | ||
| AP13ISTG42605 | AT2G03530 | AP13ISTG35810 | AT1G21410 | ||
| 29.5.11.4.5.2 | protein.degradation.ubiquitin.E3.BTB/POZ Cullin3.BTB/POZ | AP13CTG02739 | AT1G21780 | ||
| 29.5.11.5 | protein.degradation.ubiquitin.ubiquitin protease | AlamCTG14939 | AT4G39910 | ||
| 29.5.2 | protein.degradation.autophagy | AP13ISTG52648 | AT1G62040 | AP13CTG05217 | AT2G31260 |
| AP13CTG05792 | AT3G07525 | ||||
| AP13CTG13363 | AT3G15580 | ||||
| AP13CTG01433 | AT5G54730 | ||||
| 29.5.3 | protein.degradation.cysteine protease | AP13CTG12606 | AT4G39090 | AP13CTG20064 | AT1G62710 |
| AP13CTG05252 | AT4G39090 | AP13ISTG71431 | AT5G45890 | ||
| AP13ISTG73582 | AT5G45890 | ||||
| 29.5.4 | protein.degradation.aspartate protease | AP13CTG04573 | AT1G11910 | AP13CTG04573 | AT1G11910 |
| AP13CTG11126 | AT1G62290 | ||||
| 29.5.5 | protein.degradation.serine protease | AP13CTG25528 | AT5G53350 | AP13ISTG67309 | AT1G73270 |
| AP13CTG14014 | AT5G38510 | ||||
| AP13CTG05123 | AT5G51070 | ||||
| 29.5.9 | protein.degradation.AAA type | AP13CTG19438 | AT1G02890 | ||
PviUT, switchgrass Panicum virgatum Unique Transcript.