Table 5.
Predicted dinoflagellate orthologues in DNA mismatch repair.
| Genes | Gene ID (E-Value #) | Activity/Remarks | ||
|---|---|---|---|---|
| C. cohnii | S. minutum | L. polyedrum | ||
| MLH1 | Unigene48309_All (7e-103) | symbB.v1.2.021543.t1 (3e-111) | Lp_Unigene17816_All (2e-116) | MutL homolog, form heterodimer with PMS1, MLH2 and MLH3 |
| Unigene56264_All (6e-020) | ||||
| MLH3 | * | symbB.v1.2.038425.t1 (7e-014) | Lp_Unigene24248_All (7e-036) | MutL homolog, form heterodimer with MLH1 |
| PMS1 | CL7093.Contig1_All (1e-042) | symbB.v1.2.037608.t1 (1e-051) | Lp_CL13190.Contig3_All (4e-049) | MutL homolog, form heterodimer with MLH1, part of the DNA mismatch repair (MMR) complex |
| CL7093.Contig2_All (9e-044) | symbB.v1.2.037606.t1 (2e-014) | Lp_Unigene124_All (2e-049) | ||
| CL7093.Contig3_All (3e-041) | Lp_Unigene48112_All (9e-040) | |||
| MSH1 | Unigene56453_All (2e-010) | symbB.v1.2.040100.t1 (2e-012) | Lp_Unigene39523_All (1e-006) | MutS homolog, required for repair of mitochondrial DNA |
| Unigene41842_All (3e-007) | symbB.v1.2.011567.t1 (4e-019) | |||
| MSH2 | Unigene8950_All (3e-133) | symbB.v1.2.002929.t1 (1e-135) | Lp_Unigene75744_All (1e-138) | MutS homolog 2, form heterodimers with MSH3 or MSH6; component of the DNA mismatch repair (MMR) complex |
| symbB.v1.2.002929.t2 (2e-061) | ||||
| MSH3 | * | * | * | MutS homolog 3 |
| MSH6 | Unigene36848_All (2e-072) | symbB.v1.2.026874.t1 (1e-056) | Lp_CL3961.Contig1_All (6e-086) | MutS homolog 6 |
| Unigene62212_All (4e-011) | symbB.v1.2.038785.t1 (5e-012) | Lp_CL3961.Contig2_All (7e-007) | ||
| Unigene69195_All (3e-023) | symbB.v1.2.039566.t1 (1e-014) | Lp_CL3961.Contig3_All (5e-100) | ||
| Lp_CL3961.Contig4_All (2e-100) | ||||
| Lp_CL3961.Contig5_All (2e-082) | ||||
| Lp_CL3961.Contig6_All (7e-101) | ||||
| MSH4 | * | symbB.v1.2.013503.t1 (7e-060) | Lp_Unigene9260_All (8e-065) | MutS homolog 4, specific for meiosis |
| MSH5 | Unigene89588_All (4e-019) | symbB.v1.2.033801.t1 (7e-079) | Lp_Unigene70169_All (1e-039) | MutS homolog 5, specific for meiosis, formation of heterodimer with MSH4 |
| Lp_Unigene63036_All (2e-030) | ||||
| EXO1 | Unigene52745_All (3e-035) | symbB.v1.2.019143.t1 (1e-043) | Lp_CL3557.Contig1_All (9e-048) | 5′ exonuclease |
| CL691.Contig1_All (7e-037) | Lp_Unigene36569_All (2e-037) | |||
| Lp_Unigene71445_All (9e-056) | ||||
| Lp_Unigene77209_All (1e-007) | ||||
*, no orthologues could be found; #, E-value obtained from tBLASTn algorithm.