Table 7.
Predicted dinoflagellate orthologues in homologous recombination.
| Genes/Alternate Name or Function Homolog | Gene ID (E-Value #) | Activity/Remarks | ||
|---|---|---|---|---|
| C. cohnii | S. minutum | L. polyedrum | ||
| RAD51 | Unigene44686_All (1e-133) | symbB.v1.2.024814.t1 (4e-084) | Lp_CL13972.Contig1_All (8e-120) | recombinase, eukaryote RecA homologue |
| Lp_CL13972.Contig3_All (6e-123) | ||||
| Lp_CL13972.Contig4_All (6e-126) | ||||
| Lp_CL13972.Contig5_All (2e-124) | ||||
| Lp_Unigene24767_All (2e-110) | ||||
| DMC1 | Unigene64853_All (9e-113) | symbB.v1.2.000608.t1 (2e-109) | Lp_Unigene20110_All (1e-118) | RAD51 homologue specific for meiosis |
| symbB.v1.2.008353.t1 (3e-109) | ||||
| RecA | * | symbB.v1.2.015650.t1 (2e-063) | Lp_Unigene51570_All (4e-093) | bacterial recombinase |
| symbB.v1.2.028306.t1 (5e-016) | ||||
| RAD51B | Unigene1912_All (2e-016) | * | Lp_Unigene71304_All (1e-023) | RAD51 paralog |
| RAD51C | Unigene41837_All (3e-017) | * | Lp_Unigene66289_All (3e-034) | RAD51 paralog |
| RAD51D | * | * | * | RAD51 paralog |
| XRCC2 | * | symbB.v1.2.008271.t1 (2e-008) | * | DNA break and cross-link repair |
| XRCC3 | * | * | Lp_Unigene71572_All (2e-010) | DNA break and cross-link repair |
| RAD50 | CL6927.Contig1_All (2e-068) | symbB.v1.2.031416.t1 (3e-051) | Lp_Unigene51516_All (1e-065) | part of the MRN complex |
| CL6927.Contig2_All (6e-068) | symbB.v1.2.031416.t2 (3e-051) | |||
| Unigene31993_All (2e-021) | symbB.v1.2.025527.t1 (8e-044) | |||
| Unigene68915_All (7e-019) | ||||
| NBS1 | Unigene77295_All (5e-013) | symbB.v1.2.016565.t1 (3e-014) | Lp_CL4311.Contig2_All (9e-011) | part of the MRN complex |
| MRE11 | Unigene13700_All (8e-117) | symbB.v1.2.022929.t1 (1e-113) | Lp_Unigene63346_All (7e-111) | part of the MRN complex |
| symbB.v1.2.022929.t2 (2e-093) | ||||
| symbB.v1.2.022929.t3 (3e-010) | ||||
| RAD52 | * | * | * | accessory factor for recombination |
| RAD54L | Unigene77564_All (4e-149) | symbB.v1.2.021721.t2 (3e-127) | Lp_CL12947.Contig4_All (4e-148) | involved in recombination |
| symbB.v1.2.012979.t1 (9e-088) | Lp_Unigene46377_All (6e-147) | |||
| symbB.v1.2.021720.t1 (4e-077) | Lp_CL12947.Contig2_All (2e-148) | |||
| symbB.v1.2.021721.t1 (4e-066) | Lp_CL12947.Contig3_All (2e-148) | |||
| symbB.v1.2.021721.t3 (4e-066) | ||||
| RAD54B | * | symbB.v1.2.012978.t1 (6e-024) | Lp_Unigene31872_All (5e-096) | accessory factor for recombination |
| Lp_Unigene981_All (4e-037) | ||||
| BRCA2 | * | symbB.v1.2.003783.t1 (1e-008) | * | involved in recombination |
| DSS1/SHFM1 | * | * | * | BRCA2 accessary factor |
| CtIP | * | symbB.v1.2.018901.t1 (3e-006) | * | involved in DNA end resection |
| BLM/Sgs1 | * | symbB.v1.2.009075.t3 (2e-037) | Lp_Unigene24386_All (1e-018) | 3′-5′ DNA helicase |
| symbB.v1.2.009075.t4 (2e-037) | ||||
| symbB.v1.2.009075.t2 (2e-037) | ||||
| symbB.v1.2.009074.t1 (3e-041) | ||||
| symbB.v1.2.008709.t1 (7e-022) | ||||
| Top3α | Unigene32503_All (2e-163) | symbB.v1.2.026949.t1 (6e-160) | Lp_Unigene1654_All (3e-166) | DNA topoisomerase 3-alpha |
| symbB.v1.2.035328.t1 (2e-021) | Lp_Unigene44680_All (6e-022) | |||
| symbB.v1.2.037631.t1 (2e-006) | Lp_CL12602.Contig1_All (3e-011) | |||
| Lp_Unigene21536_All (4e-012) | ||||
| Lp_Unigene29037_All (1e-011) | ||||
| Lp_Unigene53944_All (3e-006) | ||||
| Lp_Unigene62514_All (3e-012) | ||||
| RMI1 | Unigene5006_All (6e-010) | symbB.v1.2.037665.t1 (1e-006) | Lp_Unigene13746_All (1e-010) | key component of the RMI complex |
| RMI2 | * | * | * | key component of the RMI complex |
| DNA2 | * | * | * | ATP-dependent helicase/nuclease |
| PARI/Srs2 | Unigene16314_All (1e-009) | * | * | inhibit inappropriate homologous recombination |
| MUS81 | Unigene1977_All (6e-016) | symbB.v1.2.018987.t1 (1e-017) | Lp_Unigene50884_All (1e-013) | subunit of structure-specific endonuclease |
| EME1/MMS4 | * | * | * | interaction with Mus81 |
| SLX1 | Unigene40330_All (4e-021) | symbB.v1.2.003012.t1 (1e-020) | Lp_Unigene20489_All (2e-020) | subunit of SLX1-SLX4 structure-specific nuclease |
| symbB.v1.2.009695.t1 (2e-012) | ||||
| SLX4 | * | * | * | subunit of SLX1-SLX4 structure-specific nuclease |
| GEN1/YEN1 | Unigene8182_All (2e-008) | * | Lp_Unigene2100_All (7e-019) | nuclease seperating Holliday junctions |
| Lp_Unigene17855_All (2e-012) | ||||
| SPO11 | Unigene18126_All (3e-012) | symbB.v1.2.038121.t1 (7e-025) | Lp_Unigene20651_All (2e-024) | meiosis specific endonuclease |
| Unigene24373_All (1e-012) | symbB.v1.2.012520.t1 (8e-031) | Lp_Unigene9316_All (2e-038) | ||
*, no orthologues could be found; #, E-value obtained from tBLASTn algorithm.