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. 2019 Jul 18;116(31):15602–15609. doi: 10.1073/pnas.1903553116

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Fig. 2. — Comparisons of heterozygosity and linkage disequilibrium (LD) on chromosome I within groups of NMP and MP clones. (A) Comparisons of average heterozygosity (mean ± SE; ****P < 0.0001). (B) Difference in average heterozygosity (Δ Heterozygosity = H_NMP − H_MP) between NMP and MP clones for the NMP and non-NMP regions on chromosome I (defined in Fig. 1; using a 10-kb window size for calculation of average ΔH). X-axis is the summed length of scaffolds (Mb). (C) Measures of LD in NMP and MP clones for the NMP and non-NMP regions; population-level linkage disequilibrium, measured as r², is calculated by using the maximum likelihood method of Maruki and Lynch (47).