Genes encoding the red (OPN1LW) and green (OPN1MW1 and OPN1MW2) opsins are organized in a head-to-tail configuration on the X chromosome (Panel A). The locus control region (LCR) couples to the promoter of the red opsin or the first green opsin gene to drive transcription and leads to the formation of either red or green cones in the retina.5 Below the canonical organization (Panel B), five different human mutations are shown, including deletion of the green opsins, leading to green color blindness (Panel C); a stop codon mutation in the red opsin gene, resulting in red color blindness (Panel D); a gene conversion event creating a red–green hybrid gene, resulting in protanomalous color vision (Panel E); a stop codon in the most proximal gene, resulting in green color blindness (Panel F); and a duplication and stop mutation in distal green opsin genes, which have no effect on color vision because distal copy genes are rarely expressed in the retina (Panel G). The sequence structure, regulation, and copy-number variation are key to understanding the genotype–phenotype correlation of this human trait.