Table 1.
Differential taxa in gut microbiota of rats fed chow supplemented with bread leavened with baker's yeast (BB) vs. sourdough (SB).
| Taxon | 16S-stool | 16S-colon | MP-stool | |||
|---|---|---|---|---|---|---|
| logFC SB/BB | Adjusted p-value | logFC SB/BB | Adjusted p-value | logFC SB/BB | Adjusted p-value | |
| A4b | 7.03 | 2.25 × 10−3 | ||||
| Bacillaceae | 6.65 | 6.58 × 10−5 | ||||
| Cytophagaceae | −4.18 | 6.86 × 10−3 | ||||
| Desulfovibrionaceae | −1.85 | 2.25 × 10−3 | ||||
| DHVEG-1 | 6.54 | 7.42 × 10−4 | ||||
| Lachnospiraceae | −1.10 | 1.66 × 10−2 | ||||
| Moraxellaceae | 7.04 | 1.78 × 10−5 | ||||
| Mycoplasmataceae | −9.40 | 8.18 × 10−4 | −7.33 | 4.53 × 10−6 | ||
| Nitrospinaceae | 6.23 | 6.35 × 10−3 | ||||
| Thermaceae | 6.46 | 2.28 × 10−4 | ||||
| Verrucomicrobiaceae | 7.66 | 2.46 × 10−3 | ||||
| Alistipes indistinctus | −5.16 | 3.81 × 10−3 | ||||
| Dubosiella | 3.57 | 2.33 × 10−2 | ||||
| Mucispirillum schaedleri | −5.25 | 1.39 × 10−3 | ||||
| Mycoplasma | −9.19 | 1.19 × 10−2 | −7.95 | 4.80 × 10−4 | ||
| YRC22 | −4.55 | 9.77 × 10−3 | ||||
Families and genera/species with statistically significant differential abundance between BB- and SB-fed rats are listed. For each taxon, the adjusted p-value (edgeR test followed by SGoF adjustment) and the logarithm of the fold change (logFC), according to 16S rRNA gene sequencing (16S; stool and colonic contents) and metaproteomic (MP; stool only) data, are reported. Features are ordered based on alphabetical order, and families (up) are separated from genera/species (down).