Table III. Fusion junction peptides identified in CPTAC ovarian samples.
| Fusion gene | Chr. | Fusion junction | Peptide sequence | # of spectra | Source DBa |
|---|---|---|---|---|---|
| ANXA2P2:ANXA2 | 9–15 | 33625242–60639739 | DTN:AERDALNIETAIK | 1 | C |
| **ANXA2P2:ANXA2 | 9–15 | 33625242–60639739 | SLYYYIQQDTN:A | 1 | C |
| *SPAG9:MBTD1 | 17–17 | 49156945–49258055 | DQ:MTTLQLK | 1 | C, T |
| EMID1:CBY1 | 22–22 | 29630338–39069164 | QGSAGQR:AGGRR | 18 | C, T |
| PPFIBP1:SMCO2 | 12–12 | 27677298–27654856 | EVCELCTL:MALTPTNLNNK | 15 | C, T |
| *CCDC6:ANK3 | 10–10 | 61665880–61802517 | ASVTI:QGEGFK | 3 | C, T |
| *CCDC6:ANK3 | 10–10 | 61665880–61802514 | ASVTI:GEGFK | 1 | C, T |
| MAPK9:UBL7 | 5–15 | 179718848–74749012 | IPAI:GAGALGSAGSMCV | 1 | C, T |
| OBSL1:STK11IP | 2–2 | 220430127–220467497 | PPPHVP:PSGTEHP | 2 | C |
| ACTN4:CAPN12 | 19–19 | 39217667–39220940 | VGWEQLLTTIA:LG | 23 | C |
| ACTN4:CAPN12 | 19–19 | 39219963–39220936 | ATCEAPD:YVFIMRAGETAEI | 1 | C |
| FBXO34:LGALS3 | 14–14 | 55738255–55604088 | RAGAAPGQAAAGAGAQ:WKPKP | 5 | C, T |
| SLC25A32:SMYD3 | 8–1 | 104419862–246518396 | FILGTLLFL:MEP | 1 | T |
| H19:COL1A1 | 11–17 | 2018215–48264480 | GSSGTAFSGLCRSLEG:PLALLVLLA | 1 | C |
| C2CD3:SYTL1 | 11–1 | 73849765–27671788 | LLS:SSVCPAGAQPQLMPQR | 1 | C, T |
| SH3BP5:METTL6 | 3–3 | 15372011–15425694 | MISTDGRLNLR:SQT | 2 | C, T |
*This fusion protein is also detected in other tissues according to the Mitelman Database.
**This fusion protein does not span junction properly, but another junction peptide (DTN:AERDALNIETAIK) supports this same fusion junction.
aC: ChimerDB 3.0; T: TumorFusions.