Table 2.
List of reference strains used for phylogenetic comparison with Polish isolates
| Pestivirus species | Subtype | Strain | 5’UTR Accesion number | Npro Accesion number |
|---|---|---|---|---|
| BVDV-1 | 1a | NADL | AJ133738 | AJ133738 |
| BVDV-1 | 1a | Singer | DQ088995 | DQ088995 |
| BVDV-1 | 1b | VEDEVAC | AJ585412 | AJ585412 |
| BVDV-1 | 1b | OSLOSS | AY279528 | M96687 |
| BVDV-1 | 1b | Manas-1 | EU555288 | – |
| BVDV-1 | 1b | New York-1 (NY-1) | FJ387232 | FJ387232 |
| BVDV-1 | 1b | KE9 | EF101530 | EF101530 |
| BVDV-1 | 1c | Shitara/01/05 | AB359926 | AB359926 |
| BVDV-1 | 1c | GS1 | – | JQ071526 |
| BVDV-1 | 1c | Letuyi | EU159701 | – |
| BVDV-1 | 1c | Manasi | EU159702 | – |
| BVDV-1 | 1d | F | AF298065 | AF287284 |
| BVDV-1 | 1d | OK1(CA)NCP/03 | AB359927 | AB359927 |
| BVDV-1 | 1d | DulanD44 | – | KC414609 |
| BVDV-1 | 1d | 10JJ-SKR | KC757383 | KC757383 |
| BVDV-1 | 1d | BJ1308 | – | KT951841 |
| BVDV-1 | 1e | SLO/2407/2006 | KX577637 | KX577637 |
| BVDV-1 | 1e | CN11a@09 | MG434588 | – |
| BVDV-1 | 1e | CH-05-02 | – | EU180036 |
| BVDV-1 | 1f | J-AT | FJ493480 | – |
| BVDV-1 | 1f | J | – | AF287286 |
| BVDV-1 | 1f | W | – | AF287290 |
| BVDV-1 | 1f | O-1897/00–175 | AY323895 | AY323895 |
| BVDV-1 | 1f | G-1703/99–43 | AY323876 | AY323876 |
| BVDV-1 | 1f | E-1411/00–9 | AY323872 | – |
| BVDV-1 | 1f | B99/05 | – | EU224259 |
| BVDV-1 | 1 g | L | FJ493483 | AF287287 |
| BVDV-1 | 1 g | A-AT | FJ493482 | – |
| BVDV-1 | 1 g | A | AF298064 | AF287283 |
| BVDV-1 | 1 g | 10/08 | JN715004 | – |
| BVDV-1 | 1 g | 48/08 | – | JN833739 |
| BVDV-1 | 1 h | G | AF298066 | AF287285 |
| BVDV-1 | 1 h | CH6569 | MH907191 | – |
| BVDV-1 | 1 h | B80/05 | EU224239 | – |
| BVDV-1 | 1 h | CH-95-11 | – | EU180042 |
| BVDV-1 | 1i | 23–15 | AF298059 | AF287279 |
| BVDV-1 | 1i | 2186 | – | JQ920329 |
| BVDV-1 | 1i | MRI2497 | LT902628 | – |
| BVDV-1 | 1j | KS86-1ncp | AB078950 | AB078950 |
| BVDV-1 | 1j | 2/Vr/95 | AJ293594 | – |
| BVDV-1 | 1j | Deer-GB1 | – | U80902 |
| BVDV-1 | 1 k | SuwaCp | AF117699 | AY894998 |
| BVDV-1 | 1 k | CH7247 | MH907869 | – |
| BVDV-1 | 1 k | Bohni | – | AY894997 |
| BVDV-1 | 1 l | 71–03 | KF205294 | – |
| BVDV-1 | 1 l | 71–15 | KF205306 | KF205329 |
| BVDV-1 | 1 l | CH-01-08 | – | EU180033 |
| BVDV-1 | 1 m | LZ05 | GU120241 | – |
| BVDV-1 | 1 m | ZM-95 | AF526381 | AF526381 |
| BVDV-1 | 1 m | XC | – | MH166806 |
| BVDV-1 | 1n | Shitara/02/06 | AB359930 | AB359930 |
| BVDV-1 | 1n | So CP/75 | AB359929 | AB359929 |
| BVDV-1 | 1o | AQGN96BI5 | AB300691 | – |
| BVDV-1 | 1o | IS25CP/01 | AB359931 | AB359931 |
| BVDV-1 | 1o | HA2–12 | – | KX218370 |
| BVDV-1 | 1p | BJ0701 | GU120247 | GU120259 |
| BVDV-1 | 1p | BJ0702 | GU120248 | GU120260 |
| BVDV-1 | 1q | camel-6 | KC695810 | KC695810 |
| BVDV-1 | 1q | SD0803 | JN400273 | JN400273 |
| BVDV-1 | 1r | VE/245/12 | LM994671 | – |
| BVDV-1 | 1r | CA/181/10 | LM994672 | – |
| BVDV-1 | 1r | 79/11 | KY040384 | KY040432 |
| BVDV-1 | 1r | 103/11 | KY040372 | KY040425 |
| BVDV-1 | 1 s | UM/136/08 | LM994673 | LN515612 |
| BVDV-1 | 1 s | mousedeer | AY158154 | – |
| BVDV-1 | 1 s | 2561 | JQ920287 | JQ920343 |
| BVDV-1 | 1 s | 22,146/81 | AJ304376 | – |
| BVDV-1 | 1 t | SI/207/12 | LM994674 | LN515611 |
| BVDV-1 | 1u | M31182 | JQ799141 | JQ799141 |
| BVDV-2 | 2a | New York’93 | AF502399 | KR093034 |
| BVDV-2 | 2a | 890 | L32886 | – |
| BVDV-2 | 2a | JZ05–1 | GQ888686 | GQ888686 |
| BVDV-2 | 2b | Soldan | U94914 | AY735495 |
| BVDV-2 | 2b | Giessen 6 | AY379547 | – |
| BVDV-2 | 2b | Hokudai-Lab/09 | – | AB567658 |
| BVDV-2 | 2b | LV60–57-13 | – | KM217405 |
| BVDV-2 | 2c | NRW 12–13 | HG426483 | HG426483 |
| BVDV-3 | 3 | Th/04_KhonKaen (TKK) | FJ040215 | FJ040215 |
| BVDV-3 | 3 | Italy-83/10-cp | JQ612705 | JQ612705 |
| BDV | – | X818 | AF037405 | AF037405 |
| CSFV | – | Alfort/187 | NC 038912 | NC 038912 |