. Author manuscript; available in PMC: 2020 Jul 15.

Published in final edited form as: Mol Ecol. 2019 Jul 15;28(14):3413–3426. doi: 10.1111/mec.15163

Table 1:

Cycling and differential expression of candidate circadian clock genes resulting from DESeq2 and JTK_Cycle analysis of subgroups.

ID	Annotation	DESeq2 p-value^*	JTK_Cycle periodicity^┼	Peak Expression^⍑
ID	Annotation	DESeq2 p-value^*	JTK_Cycle periodicity^┼	LD	LR1	LR2
NVE2080	Clock	1.20459E-08	24 (0.07)	ZT10	-	-
NVE1138	Cry1a	1.66397E-18	24^*	ZT10	ZT4	ZT4
NVE24214	Cry1b	0.03511226	24^*	ZT12	ZT20	ZT4
NVE14677	PAR-bZIPa	1.27133E-12	24^*	ZT6	ZT2	ZT6
NVE20636	PAR-bZIPb	0.052867218	28^*	ZT6	ZT20	ZT4
NVE8107	PAR-bZIPc	0.007379136	24^*	ZT18	ZT22	ZT6
NVE8679	helt	1.40066E-11	24^*	ZT6	ZT4	ZT4
NVE8085	PAR-bZIPd	2.2241E-52	24^*	ZT10	ZT4	ZT20
NVE4116	CiPC	0.000118936	24^*	ZT24	-	-

Benjamini-Hochberg-adjusted.

^┼

Periodicity significance in LD.

^⍑

Peak expression values in LD correspond to a significant JTK_Cycle period.