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. 2019 Jul 10;16(156):20190293. doi: 10.1098/rsif.2019.0293

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© 2019 The Authors.

Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.

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Figure 3. — Example data and simulation output for the root-inference framework. (a) Arabidopsis seedlings grown vertically on agar (Material and methods) provide example root systems for the analysis pipeline. (b) Digitization of the root systems using SmartRoot [35] provides the quantitative data used in the inference process. (c) Example outputs from the stochastic growth model with parameters identified through the ABC SMC inference process. Black scale bar is 1 cm. (Online version in colour.)