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. 2019 Jul 31;10:1691. doi: 10.3389/fmicb.2019.01691

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Copyright © 2019 Grillová, Oppelt, Mikalová, Nováková, Giacani, Niesnerová, Noda, Mechaly, Pospíšilová, Čejková, Grange, Dupin, Strnadel, Chen, Denham, Arora, Picardeau, Weston, Forsyth and Šmajs.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Intra-strain recombination events found among examined clinical samples. (A) Rearrangement of rrn spacer patterns. The ribosomal operon with Ile/Ala tRNA patterns differ from the ribosomal operon with Ala/Ile tRNA patterns in 34 nucleotide positions. The figure was modified according to Čejková et al. (2013). (B) Rearrangement of the modular structure of TP0856 and TP0858 genes. We identified two variants of the modular structure of the TP0856 and TP0858 genes – r1r3r4r5/r7r4r5 and r1r3r4r5/r7r4r6. These structures differ in 30 nucleotide sites. The figure was modified according to Strouhal et al. (2018). (C) Intra-strain recombination between tprG and tprJ. tprG1 and tprG2 allele variants differ in 18 variable positions.