Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2019 Aug 7;20:158. doi: 10.1186/s13059-019-1769-1

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

PMC Copyright notice

Fig. 6 — Overlap of reactions in draft reconstructions for Bordetella pertussis with those in the manually curated model. In total, 27 networks were reconstructed with 7 tools (CarveMe: C, MetaDraft: D, AuReMe: A, Pathway Tools: P, ModelSEED: S, RAVEN: R, Merlin: E). Several reconstructions, which are represented with different sub-indices, were generated for each tool using different parameters settings. Numbers inside bars represent percentages with respect to the corrected number of reactions in iBP1870, which is the total number of reactions minus the biomass-related reactions (light green). We observed a wide variation in the coverage (blue bars) and the percentage of additional reactions (yellow bars). In addition, a considerable number of reactions in the networks build with MODELSEED, RAVEN (KEGG), and Merlin contained different stoichiometry for protons than those in iBP1870 (draft green bars)