Table 7.

Count of Whole Transcriptome Differentially Expressed Genes in Zf S1500+ Gene List Compared to Random Gene Sets of the Same Size for All Gene Expression Omnibus Datasets

Series	Comparison	Set	No. of genesa	No. of genes with RNA-Seq WTr datab	No. of RNA-Seq WTr DEGs in setc	Corrected percent of RNA-Seq DEGs in setd
GSE113676	BPA Mid vs. Control	RNA-Seq WTr	20,239	20,239	54
		Zf S1500+	3,055	2,983	8	14.6
		Random1	3,055	2,924	12	22.3
		Random2	3,055	2,904	6	11.2
		Random3	3,055	2,925	7	13.0
	BPA High vs. Control	RNA-Seq WTr	20,239	20,239	148
		Zf S1500+	3,055	2,983	34	22.6
		Random1	3,055	2,924	26	17.6
		Random2	3,055	2,904	16	10.9
		Random3	3,055	2,925	21	14.2
GSE76564	Regenerating Caudal Fin vs. Uninjured	RNA-Seq WTr	17,371	17,371	371
		Zf S1500+	3,055	2,607	79	20.6
		Random1	3,055	2,515	55	14.9
		Random2	3,055	2,484	54	14.8
		Random3	3,055	2,512	50	13.6
GSE75894	Ablated Heart vs. Uninjured	RNA-Seq WTr	17,371	17,371	545
		Zf S1500+	3,055	2,607	107	19.0
		Random1	3,055	2,515	87	16.1
		Random2	3,055	2,484	82	15.3
		Random3	3,055	2,512	86	15.9
GSE100062	Rods vs. Nonrod Retinas	RNA-Seq WTr	17,629	17,629	1,018
		Zf S1500+	3,055	2,619	175	16.8
		Random1	3,055	2,547	151	14.9
		Random2	3,055	2,530	128	12.7
		Random3	3,055	2,548	157	15.5

^aNumber of genes in the set.

^bNumber of genes in each set that were measured in the RNA-Seq dataset.

^cNumber of DEGs from the WTr analysis of the RNA-Seq dataset that appear in each set.

^dPercent of DEGs from the WTr RNA-Seq dataset that appear in each set (c/b) where the count in c is corrected for the size in b with respect to the size of each subset. This is equivalent to multiplying by a correction factor of .

DEGs, differentially expressed genes.