Table 1. Viruses detected in the sample pools of pre-basic mother plants and some breeding lines.
| Accession number1 | Virus | Sequence (length) | Coverage (%)2 | Average depth3 |
|---|---|---|---|---|
| Sample pool GEN17 | ||||
| No virus detected | ||||
| Sample pool GEN18 | ||||
| FR687353.1 | RBDV4 | RNA1 (5401 nt) | 72.6 | 27.9 |
| FR687358.1 | RBDV | RNA2 (2183 nt) | 80.3 | 19.6 |
| KF241951.1 | RYNV5 | DNA (7932 nt) | 10.4 | 31.8 |
| Sample pool GEN19 | ||||
| KF241951.1 | RYNV | DNA (7932 nt) | 81.8 | 35.4 |
| Sample pool GEN20 | ||||
| No virus detected | ||||
1 NCBI database: https://www.ncbi.nlm.nih.gov/.
2 Coverage (%) of identical 21- to 24-nt siRNAs relative to the full-length viral reference sequence.
3 Average number of times the nucleotides in the reference genome were covered by the siRNA reads of the sample (identical nucleotides, no mismatches allowed).
4 RBDV, raspberry bushy dwarf virus.
5 RYNV, rubus yellow net virus.