Table 1. Information on the published medium to high coverage palaeogenomic and archaeogenomic data used in this study.
| Sample ID | (Partial) UDG treatment$ | SNP capture | Average sequencing depth± SE† | Number of SNPs† depth ≥ 10x | Reference |
|---|---|---|---|---|---|
| Stuttgart | X | 16.0 ± 7.0 | 916,374 | [23] | |
| Loschbour | X | 18.2 ± 7.6 | 950,730 | [23] | |
| Ust’-Ishim | X | 31.8 ± 8.0 | 1,016,515 | [24] | |
| sf12‡ | X | 66.3 ± 19.5 | 1,018,604 | [25] | |
| baa001‡ | X | 13.7 ± 7.0 | 807,484 | [26] | |
| Kotias‡ | 13.3 ± 7.7 | 732,775 | [27] | ||
| Bichon‡ | 15.4 ± 10.2 | 731,151 | [27] | ||
| ne1 | 19.5 ± 7.5 | 971,184 | [28] | ||
| br2 | 19.3 ± 6.1 | 993,160 | [28] | ||
| atp016‡ | 14.6 ± 6.4 | 888,522 | [29] | ||
| Rathlin1‡ | 11.2 ± 6.1 | 655,195 | [30] | ||
| Ballynahatty‡ | 11.2 ± 6.1 | 655,947 | [30] | ||
| I0054 | X | X | 2.9 ± 8.1 | 73,901 | [31] |
| I0103 | X | X | 2.8 ± 7.2 | 79,825 | [31] |
| I0118 | X | X | 2.0 ± 4.8 | 70,872 | [31] |
| I0172 | X | X | 4.0 ± 9.4 | 94,558 | [31] |
| I0408 | X | X | 2.0 ± 6.6 | 58,358 | [31] |
| I0412 | X | X | 2.2 ± 6.1 | 64,057 | [31] |
| I0585 | X | X | 2.9 ± 8.3 | 63,176 | [31] |
| TAF011‡ | X | X | 1.1 ± 3.4 | 37,737 | [32] |
| TAF013‡ | X | X | 0.9 ± 3.0 | 30,390 | [32] |
| TAF014‡ | X | X | 0.8 ± 2.4 | 22,648 | [32] |
| AltaiNeandertal | X | 47.7 ± 12.3 | 1,019,927 | [33] | |
| VindijaNeandertal | X | 28.1 ± 9.8 | 1,009,725 | [34] | |
| Denisovan | X | 28.5 ± 8.1 | 1,013,485 | [35] |
‡ Samples for which unmapped reads were obtained
$ Enzymatic repair of deamination damages
† at 1,022,984 analyzed SGDP SNPs, using a minimum mapping quality of 30