Table 3. Percentage of Neandertal ancestry (and standard errors) in sf12 using diploid and pseudo-haploid calls and different subsets of the human reference genome.
Statistic$ | Full reference | European Reference | African Reference |
---|---|---|---|
3.17 ± 0.47 | 3.73 ± 0.82 | 1.76 ± 1.01 | |
2.51 ± 0.46 | 2.97 ± 0.81 | 1.04 ± 0.99 | |
3.00 ± 0.44 | 3.44 ± 0.77 | 1.38 ± 1.01 | |
2.34 ± 0.44 | 2.71 ± 0.76 | 0.72 ± 1.01 | |
2.98 ± 0.47 | 3.43 ± 0.83 | 1.79 ± 1.02 | |
2.34 ± 0.46 | 2.71 ± 0.82 | 1.15 ± 0.99 | |
2.89 ± 0.44 | 3.18 ± 0.78 | 1.46 ± 1.02 | |
2.19 ± 0.44 | 2.46 ± 0.77 | 0.88 ± 1.01 |
$ d and h denote diploid and pseudo haploid-calls, respectively