Table 1.
A selection of DEGs involved in accumulation of storage substances in nf-yc12 endosperm as identified by RNA-seq analysis.
| Gene ID | Gene Annotation | Gene Name | Fold-change | Corrected P-value |
|---|---|---|---|---|
| Sugar transport/synthesis | ||||
| Os01g0919400 | Sucrose-phosphate synthase | SPS1 | –27.17 | 2.73×10–5 |
| Os03g0218400 | Monosaccharide transporter | OsMST4 | –2.91 | 8.55×10–12 |
| Os07g0559700 | Monosaccharide transporter | OsMST6 | –2.50 | 2.66×10–67 |
| Os05g0187100 | Hexokinase | OsHXK7 | –2.35 | 3.54×10–41 |
| Starch biosynthesis | ||||
| Os09g0298200 | ADP-glucose pyrophosphorylase | OsAGPS1 | –2.12 | 8.03×10–62 |
| Os08g0345800 | ADP-glucose pyrophosphorylase | OsAGPS2 | –3.67 | 0.00 |
| Os01g0633100 | ADP-glucose pyrophosphorylase | OsAGPL2 | –1.50 | 1.49×10–42 |
| Os03g0735000 | ADP-glucose pyrophosphorylase | OsAGPL3 | –1.83 | 3.96×10–36 |
| Os06g0133000 | Starch synthase | Wx | –1.83 | 5.63×10–93 |
| Os06g0229800 | Starch synthase | OsSSIIa | –2.04 | 6.77×10–41 |
| Os02g0744700 | Starch synthase | OsSSIIb | –2.51 | 3.13×10–4 |
| Os08g0191433 | Starch synthase | OsSSIIIa | –2.88 | 6.14×10–202 |
| Os04g0624600 | Starch synthase | OsSSIIIb | –1.54 | 1.59×10–6 |
| Protein biosynthesis | ||||
| Os03g0427300 | Seed storage protein | GluA3 | –1.58 | 4.34×10–55 |
| Os02g0249800 | Seed storage protein | GluB1 | –2.56 | 1.18×10–67 |
| Os02g0242600 | Seed storage protein | GluB4 | –2.65 | 1.07×10–241 |
| Os02g0249000 | Seed storage protein | GluD1 | –2.47 | 3.61×10–201 |
| Os02g0248800 | Seed storage protein | Unnamed | –2.53 | 1.77×10–191 |
| Os02g0268300 | Seed storage protein | Unnamed | –1.57 | 6.60×10–53 |
| Os02g0249600 | Seed storage protein | Unnamed | –1.52 | 2.89×10–46 |