Table 4. Prediction accuracies (%) of GRAF-pop for continental populations.
Study-reported population | #Subjects | GRAF-pop assigned population | ||||||
---|---|---|---|---|---|---|---|---|
European | African | Asian | Latin American 1 | Latin American 2 | South Asian | Other | ||
European | 519731 | 98.28 | 0.12 | 0.06 | 0.46 | 0.69 | 0.02 | 0.37 |
African | 94366 | 0.35 | 97.46 | 0.02 | 1.49 | 0.13 | 0.06 | 0.50 |
Asian | 30946 | 0.33 | 0.03 | 93.07 | 0.06 | 0.97 | 4.62 | 0.92 |
Hispanic | 39975 | 8.30 | 6.21 | 0.40 | 13.26 | 66.94 | 0.02 | 4.88 |
South Asian | 4109 | 0.10 | 0.10 | 0.05 | 0.34 | 0.00 | 98.27 | 1.14 |
Total | 1186387 | 74.62 | 12.10 | 5.54 | 1.62 | 4.45 | 0.72 | 0.96 |
Note: Entries in bold are considered correct predictions for the broad classification shown. Here, African means PopID 2 or 4 and Asian means PopID 3 or 7. See Figure S1 for distributions of subjects with different study-reported populations on GRAF-pop scatter plots.