Table 2. Significant QTL common between at least two traits.
| Seed Length | Seed Width | TKW | Yield | Spike Length | Spike Weight | No. of Spikelets | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP | Chrom | Pos (Mbp) | Major Allele | Minor Allele | MAF | -log(p) | R2 | -log(p) | R2 | -log(p) | R2 | -log(p) | R2 | -log(p) | R2 | -log(p) | R2 | -log(p) | R2 |
| S04_220130053 | 4 | 220.13 | G | A | 0.20 | 3.38 | 2.59 | — | — | 3.35 | 2.40 | — | — | — | — | — | — | — | — |
| S05_366528709 | 5 | 366.53 | G | C | 0.42 | 5.22 | 4.30 | — | — | 3.35 | 2.40 | — | — | — | — | — | — | — | — |
| S06_30049280 | 6 | 30.05 | T | C | 0.19 | — | — | — | — | 3.14 | 2.22 | 3.08 | 2.57 | — | — | — | — | — | — |
| S06_373070997 | 6 | 373.07 | A | C | 0.22 | — | — | — | — | — | — | 3.32 | 2.77 | — | — | 3.14 | 2.58 | — | — |
| S06_568793265 | 6 | 568.79 | G | A | 0.45 | — | — | 4.90 | 3.95 | 4.43 | 3.33 | — | — | — | — | — | — | — | |
| S11_161626009 | 11 | 161.63 | C | T | 0.16 | 3.11 | 2.35 | — | — | 3.65 | 2.66 | — | — | — | — | — | — | — | — |
| S11_241092955 | 11 | 241.09 | G | A | 0.47 | — | — | — | — | 3.74 | 2.73 | 3.30 | 3.78 | — | — | — | — | — | — |
| S11_59775443 | 11 | 59.78 | G | A | 0.26 | 3.42 | 2.63 | — | — | 3.57 | 2.59 | — | — | — | — | — | — | — | — |
| S13_134782913 | 13 | 134.78 | A | G | 0.10 | 3.27 | 2.49 | — | — | 3.81 | 2.79 | — | — | — | — | — | — | — | — |
| S13_252462690 | 13 | 252.46 | T | G | 0.34 | — | — | — | — | — | — | 4.06 | 3.51 | — | — | 4.70 | 4.14 | — | — |
| S15_600918584 | 15 | 600.92 | C | G | 0.41 | — | — | — | — | — | — | 3.32 | 2.80 | — | — | — | — | 4.55 | 3.87 |
| S16_336657077 | 16 | 336.66 | C | T | 0.42 | 3.22 | 2.45 | — | — | 3.16 | 2.23 | — | — | — | — | — | — | — | — |
| S17_108653775 | 17 | 108.65 | A | T | 0.18 | 3.70 | 2.89 | — | — | 3.29 | 2.35 | — | — | — | — | — | — | — | — |
| S18_426508862 | 18 | 426.51 | A | G | 0.08 | 3.52 | 2.72 | — | — | 3.06 | 2.16 | — | — | — | — | — | — | — | — |
| S18_545444320 | 18 | 545.44 | T | A | 0.05 | — | — | — | — | 3.01 | 2.03 | — | — | 3.35 | 2.75 | — | — | — | — |
| S18_75576716 | 18 | 75.58 | C | G | 0.18 | 3.36 | 2.58 | — | — | 4.06 | 3.01 | — | — | — | — | — | — | — | — |
| S20_603356555 | 20 | 603.36 | G | C | 0.21 | 4.51 | 3.64 | — | — | 3.25 | 2.31 | — | — | — | — | — | — | — | — |
| S21_411630228 | 21 | 411.63 | C | T | 0.13 | 3.43 | 2.64 | — | — | 3.67 | 2.67 | — | — | — | — | — | — | — | — |
| S21_90762051 | 21 | 90.76 | A | G | 0.13 | 5.85 | 4.91 | — | — | 3.65 | 2.66 | — | — | — | — | — | — | — | — |
| Total R2 | 36.18 | 3.95 | 40.53 | 15.42 | 2.75 | 6.72 | 3.87 | ||||||||||||