Table 3. Top five ranked 20-SNP windows that explain the largest proportion of genetic variance for fillet yield and harvest weight in Nile tilapia.
| CHR1 | Position | Pvar2 (%) | Window length (bp) | Genes3 | |
|---|---|---|---|---|---|
| Initial | Final | ||||
| Fillet Yield | |||||
| LG04 | 11,812,441 | 12,225,401 | 1.439 | 412,960 | cacng3, clcn7, dctn5 |
| LG06 | 25,191,450 | 25,573,340 | 0.981 | 381,890 | adap2, rab11, utp6 |
| LG18* | 24,563,797 | 24,886,884 | 0.969 | 323,087 | ankrd12, mtcl1, rab31 |
| LG23 | 40,389,783 | 41,076,465 | 0.907 | 686,682 | armh1, atp5f1d, fstl3 |
| LG07 | 61,517,871 | 61,850,135 | 0.889 | 332,264 | — |
| Harvest Weight | |||||
| LG16 | 05,380,219 | 05,989,612 | 2.082 | 609,393 | calcrl, gulp1 |
| LG22 | 34,016,287 | 34,585,708 | 1.852 | 569,421 | dnai2, ints3, npr1 |
| LG12 | 37,027,113 | 37,559,043 | 1.434 | 531,930 | endog, entr1, med27 |
| LG15 | 14,423,480 | 14,846,999 | 1.383 | 423,519 | cpsf2, extl3, fut8 |
| LG18* | 24,563,797 | 24,886,884 | 1.238 | 323,087 | — |
*
Coincident window for both traits.
1
Chromosome;
2
Percentage of genetic variance explained by each 20-SNP window;
3
Oreochromis niloticus used as reference species (full list of genes are available in Table S1).